HL_7CPU_113
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CGGGGUGCCCUGGCGGCCCUG*G
- Length
- 22 nucleotides
- Bulged bases
- 7CPU|1|S2|G|1761, 7CPU|1|S2|C|1770, 7CPU|1|S2|G|1771, 7CPU|1|S2|C|1775
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7CPU_113 not in the Motif Atlas
- Geometric match to HL_4LFB_005
- Geometric discrepancy: 0.3658
- The information below is about HL_4LFB_005
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_90436.3
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 46
Unit IDs
7CPU|1|S2|C|1757
7CPU|1|S2|G|1758
7CPU|1|S2|G|1759
7CPU|1|S2|G|1760
7CPU|1|S2|G|1761
7CPU|1|S2|U|1762
7CPU|1|S2|G|1772
7CPU|1|S2|C|1773
7CPU|1|S2|C|1774
7CPU|1|S2|C|1775
7CPU|1|S2|U|1776
7CPU|1|S2|G|1777
7CPU|1|S2|G|1778
7CPU|1|S2|C|1770
7CPU|1|S2|G|1771
7CPU|1|S2|G|1772
7CPU|1|S2|C|1773
7CPU|1|S2|C|1774
7CPU|1|S2|C|1775
7CPU|1|S2|U|1776
7CPU|1|S2|G|1777
*
7CPU|1|S2|G|1778
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6
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