HL_7CPU_116

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GCCCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_116 not in the Motif Atlas

Homologous match to HL_6UFG_007

Geometric discrepancy: 0.1546

The information below is about HL_6UFG_007

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

7CPU|1|S6|G|31
7CPU|1|S6|C|32
7CPU|1|S6|C|33
7CPU|1|S6|C|34
7CPU|1|S6|A|35
7CPU|1|S6|U|36
7CPU|1|S6|A|37
7CPU|1|S6|A|38
7CPU|1|S6|C|39

Current chains

Chain S6

Met-tRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SQ

40S ribosomal protein S16