HL_7CPV_027

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_027 not in the Motif Atlas

Homologous match to HL_8C3A_026

Geometric discrepancy: 0.1108

The information below is about HL_8C3A_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7CPV|1|L5|G|1689
7CPV|1|L5|G|1690
7CPV|1|L5|A|1691
7CPV|1|L5|U|1692
7CPV|1|L5|G|1693
7CPV|1|L5|A|1694
7CPV|1|L5|A|1695
7CPV|1|L5|C|1696

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a