HL_7CPV_078
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- CACUUG
- Length
- 6 nucleotides
- Bulged bases
- 7CPV|1|L8|U|111
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7CPV_078 not in the Motif Atlas
- Homologous match to HL_5TBW_075
- Geometric discrepancy: 0.1379
- The information below is about HL_5TBW_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
7CPV|1|L8|C|107
7CPV|1|L8|A|108
7CPV|1|L8|C|109
7CPV|1|L8|U|110
7CPV|1|L8|U|111
7CPV|1|L8|G|112
Current chains
- Chain L8
- Mus musculus 5.8S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- 60S ribosomal protein L23a
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- Ribosomal protein L39-like
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