HL_7CPV_081

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

7CPV|1|S2|C|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_081 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.2272

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.5

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

7CPV|1|S2|C|69
7CPV|1|S2|G|70
7CPV|1|S2|G|71
7CPV|1|S2|C|72
7CPV|1|S2|C|73
7CPV|1|S2|G|74
7CPV|1|S2|G|75
7CPV|1|S2|U|76
7CPV|1|S2|A|77
7CPV|1|S2|C|78
7CPV|1|S2|A|79
7CPV|1|S2|G|80

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6