HL_7CPV_100
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- AUUCCCAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7CPV_100 not in the Motif Atlas
- Geometric match to HL_4GXY_003
- Geometric discrepancy: 0.3518
- The information below is about HL_4GXY_003
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_97725.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7CPV|1|S2|A|1114
7CPV|1|S2|U|1115
7CPV|1|S2|U|1116
7CPV|1|S2|C|1117
7CPV|1|S2|C|1118
7CPV|1|S2|C|1119
7CPV|1|S2|A|1120
7CPV|1|S2|U|1121
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SB
- 40S ribosomal protein S3a
- Chain Sb
- 40S ribosomal protein S27
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