HL_7CPV_114

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

7CPV|1|S6|C|17, 7CPV|1|S6|G|18, 7CPV|1|S6|G|19, 7CPV|1|S6|A|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPV_114 not in the Motif Atlas

Homologous match to HL_5E81_205

Geometric discrepancy: 0.4135

The information below is about HL_5E81_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPV|1|S6|C|14
7CPV|1|S6|A|15
7CPV|1|S6|G|16
7CPV|1|S6|C|17
7CPV|1|S6|G|18
7CPV|1|S6|G|19
7CPV|1|S6|A|20
7CPV|1|S6|A|21
7CPV|1|S6|G|22

Current chains

Chain S6

Met-tRNA

Nearby chains