HL_7CPV_119
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- GGCGCCGCGAGGC
- Length
- 13 nucleotides
- Bulged bases
- 7CPV|1|L5|C|2318, 7CPV|1|L5|G|2319, 7CPV|1|L5|C|2320
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7CPV_119 not in the Motif Atlas
- Geometric match to HL_5TBW_226
- Geometric discrepancy: 0.2487
- The information below is about HL_5TBW_226
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_59342.2
- Basepair signature
- cWW-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7CPV|1|L5|G|2313
7CPV|1|L5|G|2314
7CPV|1|L5|C|2315
7CPV|1|L5|G|2316
7CPV|1|L5|C|2317
7CPV|1|L5|C|2318
7CPV|1|L5|G|2319
7CPV|1|L5|C|2320
7CPV|1|L5|G|2321
7CPV|1|L5|A|2322
7CPV|1|L5|G|2323
7CPV|1|L5|G|2324
7CPV|1|L5|C|2325
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LZ
- 60S ribosomal protein L27
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