HL_7D4I_006

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7D4I|1|SA|A|156, 7D4I|1|SA|A|157, 7D4I|1|SA|U|159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D4I_006 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.5521

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7D4I|1|SA|G|154
7D4I|1|SA|U|155
7D4I|1|SA|A|156
7D4I|1|SA|A|157
7D4I|1|SA|U|158
7D4I|1|SA|U|159
7D4I|1|SA|C|160

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RJ

Ribosome biogenesis protein BMS1

Chain SH

40S ribosomal protein S6-A

Chain SZ

40S ribosomal protein S24-A