HL_7D5S_007

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAUCUUG

Length

7 nucleotides

Bulged bases

7D5S|1|5A|U|253, 7D5S|1|5A|U|255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D5S_007 not in the Motif Atlas

Geometric match to HL_5U30_001

Geometric discrepancy: 0.1746

The information below is about HL_5U30_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7D5S|1|5A|C|251
7D5S|1|5A|A|252
7D5S|1|5A|U|253
7D5S|1|5A|C|254
7D5S|1|5A|U|255
7D5S|1|5A|U|256
7D5S|1|5A|G|257

Current chains

Chain 5A

5' ETS

Nearby chains

Chain RI

Ribosome biogenesis protein UTP30

Chain RJ

Ribosome biogenesis protein BMS1

Chain RW

Regulator of rDNA transcription protein 14

Chain SA

Small subunit ribosomal RNA; SSU rRNA