7D5S Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7D5S_007 | 1/5A/251:257 | Mini UNCG | geometric HL_5U30_001 HL_90436.2 | |
| HL_7D5S_008 | 1/5A/301:305 | Mini UNCG | geometric HL_4V9F_021 HL_90436.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7D5S_001 | No text annotation | ||
| HL_7D5S_002 | No text annotation | ||
| HL_7D5S_003 | No text annotation | ||
| HL_7D5S_004 | No text annotation | ||
| HL_7D5S_005 | GNRA | ||
| HL_7D5S_006 | GNRA | ||
| HL_7D5S_009 | GNRA related | ||
| HL_7D5S_010 | No text annotation | ||
| HL_7D5S_011 | No text annotation | ||
| HL_7D5S_012 | No text annotation | ||
| HL_7D5S_013 | GNRA | ||
| HL_7D5S_014 | No text annotation | ||
| HL_7D5S_015 | No text annotation | ||
| HL_7D5S_027 | No text annotation | ||
| HL_7D5S_016 | No text annotation | ||
| HL_7D5S_017 | GNRA | ||
| HL_7D5S_018 | No text annotation | ||
| HL_7D5S_019 | No text annotation | ||
| HL_7D5S_020 | No text annotation | ||
| HL_7D5S_021 | No text annotation | ||
| HL_7D5S_022 | GNRA | ||
| HL_7D5S_023 | Mini UNCG | ||
| HL_7D5S_024 | Purine riboswitch | ||
| HL_7D5S_025 | GNRA | ||
| HL_7D5S_026 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7D5S_068 | 1/3A/85:96, 1/3A/320:325 | No text annotation | ||
| IL_7D5S_016 | 1/5A/238:240, 1/5A/273:274 | Single bulged U | geometric IL_6JDV_003 IL_97561.2 | |
| IL_7D5S_017 | 1/5A/245:246, 1/5A/266:268 | Single bulged U | geometric IL_7KVT_002 IL_97561.2 | |
| IL_7D5S_018 | 1/5A/250:251, 1/5A/257:262 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_7D5S_074 | 1/SA/1480:1493, 1/SA/1514:1527 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7D5S_001 | Single bulged G | ||
| IL_7D5S_002 | No text annotation | ||
| IL_7D5S_003 | No text annotation | ||
| IL_7D5S_004 | No text annotation | ||
| IL_7D5S_005 | No text annotation | ||
| IL_7D5S_006 | No text annotation | ||
| IL_7D5S_007 | Single bulged G | ||
| IL_7D5S_008 | Isolated non-canonical cWW pair | ||
| IL_7D5S_076 | No text annotation | ||
| IL_7D5S_009 | Isolated cWH basepair | ||
| IL_7D5S_010 | No text annotation | ||
| IL_7D5S_011 | Single stack bend | ||
| IL_7D5S_012 | Single bulged U | ||
| IL_7D5S_013 | No text annotation | ||
| IL_7D5S_069 | No text annotation | ||
| IL_7D5S_014 | No text annotation | ||
| IL_7D5S_070 | Isolated non-canonical cWW pair | ||
| IL_7D5S_015 | Tandem non-canonical cWW pairs | ||
| IL_7D5S_019 | Major groove minor groove platform; mini C-loop | ||
| IL_7D5S_020 | Single bulged A | ||
| IL_7D5S_021 | Single bulged U | ||
| IL_7D5S_022 | Tandem non-canonical cWW pairs | ||
| IL_7D5S_023 | No text annotation | ||
| IL_7D5S_071 | No text annotation | ||
| IL_7D5S_072 | No text annotation | ||
| IL_7D5S_024 | Stack outside cWW | ||
| IL_7D5S_025 | No text annotation | ||
| IL_7D5S_026 | Single stack bend | ||
| IL_7D5S_027 | Single bulged U | ||
| IL_7D5S_028 | Single bulged A | ||
| IL_7D5S_029 | Isolated non-canonical cWW pair | ||
| IL_7D5S_030 | No text annotation | ||
| IL_7D5S_031 | Isolated non-canonical cWW pair | ||
| IL_7D5S_032 | Single bulged U | ||
| IL_7D5S_033 | Isolated non-canonical cWW contact | ||
| IL_7D5S_034 | Single bulged C | ||
| IL_7D5S_035 | Single bulged A | ||
| IL_7D5S_036 | No text annotation | ||
| IL_7D5S_037 | Tandem non-canonical cWW pairs | ||
| IL_7D5S_038 | No text annotation | ||
| IL_7D5S_039 | No text annotation | ||
| IL_7D5S_040 | No text annotation | ||
| IL_7D5S_041 | Single stack bend | ||
| IL_7D5S_042 | No text annotation | ||
| IL_7D5S_043 | Major groove platform; stack outside cWW | ||
| IL_7D5S_073 | Isolated non-canonical cWW pair | ||
| IL_7D5S_044 | Tandem non-canonical cWW pairs | ||
| IL_7D5S_077 | Single bulged U | ||
| IL_7D5S_045 | Isolated non-canonical cWW pair | ||
| IL_7D5S_046 | Tandem non-canonical cWW pairs | ||
| IL_7D5S_047 | Tandem non-canonical cWW pairs | ||
| IL_7D5S_048 | Kink-turn related | ||
| IL_7D5S_049 | Other IL | ||
| IL_7D5S_050 | tSH-tHW-tHS | ||
| IL_7D5S_051 | C-loop | ||
| IL_7D5S_052 | Single stack bend | ||
| IL_7D5S_053 | Minor groove platform | ||
| IL_7D5S_054 | No text annotation | ||
| IL_7D5S_055 | No text annotation | ||
| IL_7D5S_056 | No text annotation | ||
| IL_7D5S_057 | Tandem non-canonical cWW pairs | ||
| IL_7D5S_058 | Tandem non-canonical cWW pairs | ||
| IL_7D5S_078 | No text annotation | ||
| IL_7D5S_059 | No text annotation | ||
| IL_7D5S_060 | No text annotation | ||
| IL_7D5S_061 | Isolated non-canonical cWW pair | ||
| IL_7D5S_062 | Double sheared | ||
| IL_7D5S_063 | Isolated non-canonical cWW pair | ||
| IL_7D5S_064 | Tandem non-canonical cWW pairs | ||
| IL_7D5S_075 | No text annotation | ||
| IL_7D5S_065 | Triple sheared | ||
| IL_7D5S_066 | Single stack bend | ||
| IL_7D5S_067 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_7D5S_001 | 1/3A/54:62, 1/5A/291:299, 1/5A/307:333, 1/5A/391:397, 1/5A/460:462 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7D5S_001 | No text annotation | ||
| J3_7D5S_002 | No text annotation | ||
| J3_7D5S_003 | No text annotation | ||
| J3_7D5S_006 | No text annotation | ||
| J3_7D5S_004 | No text annotation | ||
| J3_7D5S_005 | No text annotation | ||
| J5_7D5S_002 | No text annotation | ||
| J5_7D5S_003 | No text annotation |
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