HL_7D5S_010

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUGAAACACC

Length

10 nucleotides

Bulged bases

7D5S|1|5A|A|427, 7D5S|1|5A|C|430, 7D5S|1|5A|C|432

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D5S|1|5A|G|424
7D5S|1|5A|U|425
7D5S|1|5A|G|426
7D5S|1|5A|A|427
7D5S|1|5A|A|428
7D5S|1|5A|A|429
7D5S|1|5A|C|430
7D5S|1|5A|A|431
7D5S|1|5A|C|432
7D5S|1|5A|C|433

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 3C

rRNA 2'-O-methyltransferase fibrillarin

Chain 5D

U3 small nucleolar RNA-associated protein 11

Chain 5J

rRNA-processing protein FCF2