HL_7D5S_012

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UCACAAAUUAGUGACAA

Length

17 nucleotides

Bulged bases

7D5S|1|SA|C|435, 7D5S|1|SA|A|436, 7D5S|1|SA|A|437, 7D5S|1|SA|A|438, 7D5S|1|SA|C|469

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D5S|1|SA|U|37
7D5S|1|SA|C|38
7D5S|1|SA|A|39
7D5S|1|SA|C|435
7D5S|1|SA|A|436
7D5S|1|SA|A|437
7D5S|1|SA|A|438
7D5S|1|SA|U|439
7D5S|1|SA|U|440
7D5S|1|SA|A|464
7D5S|1|SA|G|465
7D5S|1|SA|U|466
7D5S|1|SA|G|467
7D5S|1|SA|A|468
7D5S|1|SA|C|469
7D5S|1|SA|A|470
7D5S|1|SA|A|471

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RJ

Ribosome biogenesis protein BMS1

Chain SK

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S23-A