HL_7D5S_021

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUGCAUUGAUGC

Length

12 nucleotides

Bulged bases

7D5S|1|SA|A|1436

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D5S_021 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.193

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7D5S|1|SA|G|1271
7D5S|1|SA|U|1272
7D5S|1|SA|G|1273
7D5S|1|SA|C|1274
7D5S|1|SA|A|1275
7D5S|1|SA|U|1276
7D5S|1|SA|U|1434
7D5S|1|SA|G|1435
7D5S|1|SA|A|1436
7D5S|1|SA|U|1437
7D5S|1|SA|G|1438
7D5S|1|SA|C|1439

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RG

Ribosomal RNA small subunit methyltransferase NEP1

Chain RS

Essential nuclear protein 1