HL_7D5S_023
3D structure
- PDB id
- 7D5S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 7D5S|1|SA|U|1595, 7D5S|1|SA|C|1596, 7D5S|1|SA|G|1601
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7D5S_023 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.3365
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
7D5S|1|SA|G|1594
7D5S|1|SA|U|1595
7D5S|1|SA|C|1596
7D5S|1|SA|A|1597
7D5S|1|SA|U|1598
7D5S|1|SA|C|1599
7D5S|1|SA|A|1600
7D5S|1|SA|G|1601
7D5S|1|SA|C|1602
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain 5E
- U3 small nucleolar RNA-associated protein MPP10
- Chain 5G
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain RN
- Nucleolar complex protein 14
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