HL_7D5S_025

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D5S_025 not in the Motif Atlas

Geometric match to HL_6UFH_004

Geometric discrepancy: 0.2211

The information below is about HL_6UFH_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7D5S|1|SA|G|1698
7D5S|1|SA|G|1699
7D5S|1|SA|C|1700
7D5S|1|SA|A|1701
7D5S|1|SA|A|1702
7D5S|1|SA|C|1703

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RE

U3 small nucleolar RNA-associated protein 22