HL_7D5T_009

3D structure

PDB id

7D5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

7D5T|1|SA|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D5T_009 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1361

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7D5T|1|SA|C|491
7D5T|1|SA|A|492
7D5T|1|SA|U|493
7D5T|1|SA|U|494
7D5T|1|SA|C|495
7D5T|1|SA|G|496

Current chains

Chain SA

18S rRNA

Nearby chains

Chain 5H

Something about silencing protein 10

Chain 5J

rRNA-processing protein FCF2

Chain 5K

rRNA-processing protein FCF1

Chain RJ

Ribosome biogenesis protein BMS1