HL_7D5T_023

3D structure

PDB id

7D5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

7D5T|1|SA|U|1595, 7D5T|1|SA|C|1596, 7D5T|1|SA|G|1601

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D5T|1|SA|G|1594
7D5T|1|SA|U|1595
7D5T|1|SA|C|1596
7D5T|1|SA|A|1597
7D5T|1|SA|U|1598
7D5T|1|SA|C|1599
7D5T|1|SA|A|1600
7D5T|1|SA|G|1601
7D5T|1|SA|C|1602

Current chains

Chain SA

18S rRNA

Nearby chains

Chain 5E

U3 small nucleolar RNA-associated protein MPP10

Chain 5G

U3 small nucleolar ribonucleoprotein protein IMP4

Chain RJ

Ribosome biogenesis protein BMS1

Chain RN

Nucleolar complex protein 14