3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
UAAUA
Length
5 nucleotides
Bulged bases
7D63|1|5A|A|302, 7D63|1|5A|U|304
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7D63_005 not in the Motif Atlas
Geometric match to HL_4V9F_021
Geometric discrepancy: 0.1452
The information below is about HL_4V9F_021
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_90436.1
Basepair signature
cWW-F
Number of instances in this motif group
37

Unit IDs

7D63|1|5A|U|301
7D63|1|5A|A|302
7D63|1|5A|A|303
7D63|1|5A|U|304
7D63|1|5A|A|305

Current chains

Chain 5A
5' ETS

Nearby chains

Chain 5C
U3 small nucleolar RNA-associated protein 7
Chain B1
Periodic tryptophan protein 2
Chain BE
U3 small nucleolar RNA-associated protein 21

Coloring options:


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