HL_7D63_005

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

UAAUA

Length

5 nucleotides

Bulged bases

7D63|1|5A|A|302, 7D63|1|5A|U|304

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D63_005 not in the Motif Atlas

Geometric match to HL_4V9F_021

Geometric discrepancy: 0.1452

The information below is about HL_4V9F_021

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7D63|1|5A|U|301
7D63|1|5A|A|302
7D63|1|5A|A|303
7D63|1|5A|U|304
7D63|1|5A|A|305

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5C

U3 small nucleolar RNA-associated protein 7

Chain B1

Periodic tryptophan protein 2

Chain BE

U3 small nucleolar RNA-associated protein 21