RNA 3D Hub //

7D63 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7D63_0031/5A/4:9No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_7D63_0051/5A/301:305Mini UNCG
geometric
HL_4V9F_021
HL_48778.2
HL_7D63_0061/5A/514:521No text annotation
geometric
HL_7RQB_022
NA
HL_7D63_0071/SA/70:81No text annotation
HL_7D63_0081/SA/154:160GNRA related
homologous
HL_4V88_188
NA
HL_7D63_0091/SA/186:199No text annotation
HL_7D63_0101/SA/230:235No text annotation
geometric
HL_4WF9_009
HL_81100.2
HL_7D63_0111/SA/275:281No text annotation
HL_7D63_0121/SA/330:338GNRA related
homologous
HL_4V88_193
NA
HL_7D63_0131/SA/364:381No text annotation
HL_7D63_0141/SA/393:404No text annotation
homologous
HL_4V88_195
NA
HL_7D63_0151/SA/450:456No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_7D63_0161/SA/491:496GNRA
geometric
HL_4V9F_040
HL_37824.7
HL_7D63_0171/SA/520:532No text annotation
geometric
HL_4V88_199
NA
HL_7D63_0181/SA/561:566No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_7D63_0211/SA/900:909No text annotation
homologous
HL_4V88_206
NA
HL_7D63_0221/SA/937:942GNRA
homologous
HL_4V88_207
NA
HL_7D63_0231/SA/1055:1064Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_7D63_0241/SA/1129:1139No text annotation
HL_7D63_0271/SA/1501:1506GNRA
homologous
HL_4V88_218
NA
HL_7D63_0281/SA/1550:1561No text annotation
HL_7D63_0291/SA/1594:1602Mini UNCG
geometric
HL_4OOG_001
HL_56334.1
HL_7D63_0301/SA/1629:1636No text annotation
geometric
HL_4LX6_002
HL_31585.4
HL_7D63_0341/SA/1698:1703GNRA
geometric
HL_7A0S_047
HL_37824.7
HL_7D63_0311/SA/1699:1703No text annotation
HL_7D63_0321/SA/1777:1784tRNA anticodon loop
geometric
HL_3RG5_006
HL_04259.3

Problematic loops

#loop idProblemSequence
HL_7D63_001No text annotation
HL_7D63_002No text annotation
HL_7D63_004No text annotation
HL_7D63_019Mini UNCG
HL_7D63_020No text annotation
HL_7D63_025No text annotation
HL_7D63_026No text annotation
HL_7D63_033tRNA anticodon loop

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7D63_0011/3A/6:7,
1/SA/1117:1119		Single bulged G
geometric
IL_3IGI_004
IL_00225.13
IL_7D63_0021/3A/48:50,
1/5A/466:470		No text annotation
geometric
IL_4V9F_053
IL_09990.4
IL_7D63_0031/3A/78:85,
1/3A/325:329		No text annotation
IL_7D63_0671/3A/85:98,
1/3A/317:325		No text annotation
IL_7D63_0041/3A/96:98,
1/3A/317:320		No text annotation
IL_7D63_0051/3A/111:115,
1/3A/252:259		No text annotation
IL_7D63_0071/5A/17:18,
1/5A/62:64		Single bulged G
geometric
IL_3NDB_004
IL_00225.13
IL_7D63_0081/5A/497:499,
1/5A/539:542		Isolated non-canonical cWW pair
geometric
IL_3TD0_005
IL_57744.1
IL_7D63_0091/5A/501:503,
1/5A/533:537		No text annotation
IL_7D63_0101/5A/505:507,
1/5A/529:531		Isolated non-canonical cWW pair
geometric
IL_5MSF_001
IL_87907.2
IL_7D63_0111/5A/510:511,
1/5A/524:526		Single bulged U
geometric
IL_6UFH_004
IL_89505.4
IL_7D63_0121/5A/550:552,
1/5A/585:587		Isolated non-canonical cWW contact
geometric
IL_5UNE_001
IL_44465.1
IL_7D63_0131/SA/24:26,
1/SA/600:601		Single bulged C
geometric
IL_7KGA_001
IL_61258.15
IL_7D63_0141/SA/50:53,
1/SA/427:429		No text annotation
geometric
IL_4N0T_004
IL_99358.1
IL_7D63_0151/SA/58:63,
1/SA/87:89		No text annotation
homologous
IL_4V88_389
NA
IL_7D63_0751/SA/64:69,
1/SA/82:86		No text annotation
homologous
IL_8CRE_396
IL_21667.1
IL_7D63_0171/SA/109:112,
1/SA/302:305		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_7D63_0181/SA/113:116,
1/SA/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_7D63_0681/SA/113:117,
1/SA/299:301		Decoding loop related
geometric
IL_2O3X_003
IL_31737.3
IL_7D63_0191/SA/117:122,
1/SA/295:299		No text annotation
homologous
IL_4V88_393
NA
IL_7D63_0201/SA/143:149,
1/SA/165:172		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_7D63_0211/SA/150:152,
1/SA/162:164		Isolated cWH basepair
geometric
IL_4KQ0_004
IL_10167.6
IL_7D63_0221/SA/204:206,
1/SA/259:263		Major groove platform with extra cWW
homologous
IL_4V88_397
NA
IL_7D63_0231/SA/206:208,
1/SA/257:259		Isolated non-canonical cWW pair
homologous
IL_4V88_398
NA
IL_7D63_0241/SA/226:228,
1/SA/237:241		No text annotation
IL_7D63_0251/SA/265:267,
1/SA/288:289		Single bulged A
homologous
IL_4V88_399
NA
IL_7D63_0261/SA/270:274,
1/SA/282:285		No text annotation
IL_7D63_0691/SA/310:311,
1/SA/355:357		No text annotation
IL_7D63_0271/SA/311:316,
1/SA/348:355		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_7D63_0281/SA/318:323,
1/SA/345:346		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_7D63_0291/SA/389:391,
1/SA/406:408		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_7D63_0301/SA/443:447,
1/SA/460:461		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_7D63_0311/SA/447:448,
1/SA/458:460		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_7D63_0321/SA/482:483,
1/SA/504:506		Single bulged A
homologous
IL_4V88_409
NA
IL_7D63_0331/SA/514:516,
1/SA/536:543		No text annotation
homologous
IL_8C3A_420
NA
IL_7D63_0341/SA/517:520,
1/SA/532:535		Tandem non-canonical cWW pairs
geometric
IL_6JDV_001
IL_77658.1
IL_7D63_0351/SA/551:552,
1/SA/584:587		No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_7D63_0361/SA/552:559,
1/SA/568:584		No text annotation
IL_7D63_0371/SA/624:626,
1/SA/973:975		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_7D63_0381/SA/627:631,
1/SA/969:972		No text annotation
IL_7D63_0391/SA/631:632,
1/SA/967:969		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_7D63_0401/SA/646:648,
1/SA/686:688		Isolated non-canonical cWW pair
homologous
IL_4V88_419
NA
IL_7D63_0411/SA/652:659,
1/SA/677:682		No text annotation
IL_7D63_0421/SA/865:866,
1/SA/962:965		Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_7D63_0701/SA/868:869,
1/SA/958:960		Single bulged U
geometric
IL_6UFH_004
IL_89505.4
IL_7D63_0711/SA/871:873,
1/SA/954:956		Isolated non-canonical cWW pair
geometric
IL_5TBW_068
NA
IL_7D63_0451/SA/874:878,
1/SA/950:953		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_7D63_0461/SA/885:888,
1/SA/924:927		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_7D63_0471/SA/893:899,
1/SA/910:919		Kink-turn related
homologous
IL_8C3A_440
NA
IL_7D63_0481/SA/1033:1034,
1/SA/1083:1085		Single bulged A
geometric
IL_5CNR_002
IL_31462.6
IL_7D63_0491/SA/1035:1039,
1/SA/1079:1082		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_7D63_0501/SA/1041:1044,
1/SA/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_7D63_0511/SA/1051:1053,
1/SA/1066:1067		Single stack bend
geometric
IL_4C7O_002
IL_90729.1
IL_7D63_0521/SA/1157:1160,
1/SA/1617:1621		C-loop
homologous
IL_4V88_443
NA
IL_7D63_0531/SA/1173:1174,
1/SA/1464:1466		Single stack bend
geometric
IL_7RQB_058
NA
IL_7D63_0541/SA/1174:1176,
1/SA/1463:1464		Minor groove platform
geometric
IL_5TBW_039
NA
IL_7D63_0551/SA/1212:1216,
1/SA/1448:1451		No text annotation
IL_7D63_0561/SA/1268:1270,
1/SA/1440:1441		No text annotation
IL_7D63_0571/SA/1495:1498,
1/SA/1509:1512		Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_7D63_0581/SA/1540:1545,
1/SA/1566:1571		No text annotation
homologous
IL_4V88_462
NA
IL_7D63_0591/SA/1650:1652,
1/SA/1748:1750		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_7D63_0761/SA/1653:1659,
1/SA/1742:1747		No text annotation
IL_7D63_0731/SA/1665:1667,
1/SA/1734:1736		Isolated non-canonical cWW pair
homologous
IL_8C3A_477
NA
IL_7D63_0621/SA/1669:1672,
1/SA/1729:1732		Double sheared
geometric
IL_5BTP_004
IL_09705.15
IL_7D63_0631/SA/1672:1674,
1/SA/1727:1729		Isolated non-canonical cWW pair
homologous
IL_4V88_472
NA
IL_7D63_0741/SA/1675:1685,
1/SA/1716:1726		No text annotation
IL_7D63_0641/SA/1688:1690,
1/SA/1711:1713		No text annotation
IL_7D63_0651/SA/1693:1695,
1/SA/1706:1708		Isolated near basepair
geometric
IL_3NJ7_004
IL_42997.3
IL_7D63_0661/SA/1696:1699,
1/SA/1703:1705		No text annotation
geometric
IL_4V87_185
NA

Problematic loops

#loop idProblemSequence
IL_7D63_006No text annotation
IL_7D63_016Triple sheared related
IL_7D63_043Tandem non-canonical cWW pairs
IL_7D63_044Tandem non-canonical cWW pairs
IL_7D63_060No text annotation
IL_7D63_072No text annotation
IL_7D63_061Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7D63_0021/SA/633:635,
1/SA/861:865,
1/SA/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_7D63_0071/SA/633:635,
1/SA/861:866,
1/SA/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_7D63_0031/SA/881:884,
1/SA/928:936,
1/SA/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_7D63_0041/SA/1150:1151,
1/SA/1627:1629,
1/SA/1636:1640		No text annotation
J3_7D63_0081/SA/1161:1164,
1/SA/1581:1587,
1/SA/1609:1616		No text annotation
homologous
J3_8C3A_038
NA
J3_7D63_0051/SA/1168:1171,
1/SA/1468:1470,
1/SA/1574:1577		No text annotation
homologous
J3_4V88_036
NA
J3_7D63_0101/SA/1470:1474,
1/SA/1533:1545,
1/SA/1566:1574		No text annotation
J4_7D63_0011/SA/99:107,
1/SA/307:310,
1/SA/357:364,
1/SA/381:384		No text annotation
J5_7D63_0011/SA/31:37,
1/SA/471:479,
1/SA/509:514,
1/SA/543:546,
1/SA/592:595		No text annotation
J5_7D63_0021/SA/31:37,
1/SA/471:479,
1/SA/509:516,
1/SA/536:546,
1/SA/592:595		No text annotation

Problematic loops

#loop idProblemSequence
J3_7D63_001No text annotation
J3_7D63_006No text annotation
J3_7D63_009No text annotation

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