HL_7D63_010

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7D63|1|SA|C|233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D63_010 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.3837

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7D63|1|SA|C|230
7D63|1|SA|U|231
7D63|1|SA|U|232
7D63|1|SA|C|233
7D63|1|SA|G|234
7D63|1|SA|G|235

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20