HL_7D63_013

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

GGAAUAAGGGUUCGAUUC

Length

18 nucleotides

Bulged bases

7D63|1|SA|G|371, 7D63|1|SA|G|372, 7D63|1|SA|U|374, 7D63|1|SA|U|375

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D63|1|SA|G|364
7D63|1|SA|G|365
7D63|1|SA|A|366
7D63|1|SA|A|367
7D63|1|SA|U|368
7D63|1|SA|A|369
7D63|1|SA|A|370
7D63|1|SA|G|371
7D63|1|SA|G|372
7D63|1|SA|G|373
7D63|1|SA|U|374
7D63|1|SA|U|375
7D63|1|SA|C|376
7D63|1|SA|G|377
7D63|1|SA|A|378
7D63|1|SA|U|379
7D63|1|SA|U|380
7D63|1|SA|C|381

Current chains

Chain SA

18S rRNA

Nearby chains

Chain 3F

Ribosomal RNA-processing protein 9

Chain RB

U3 small nucleolar ribonucleoprotein protein LCP5

Chain SF

40S ribosomal protein S4-A

Chain SK

40S ribosomal protein S9-A

Chain SM

40S ribosomal protein S11-A