3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
UAAUUCA
Length
7 nucleotides
Bulged bases
7D63|1|SA|A|452, 7D63|1|SA|U|454, 7D63|1|SA|C|455
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7D63_015 not in the Motif Atlas
Geometric match to HL_4WF9_003
Geometric discrepancy: 0.1495
The information below is about HL_4WF9_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.6
Basepair signature
cWW-F
Number of instances in this motif group
21

Unit IDs

7D63|1|SA|U|450
7D63|1|SA|A|451
7D63|1|SA|A|452
7D63|1|SA|U|453
7D63|1|SA|U|454
7D63|1|SA|C|455
7D63|1|SA|A|456

Current chains

Chain SA
18S rRNA

Nearby chains

Chain RP
U3 small nucleolar RNA-associated protein 20
Chain SF
40S ribosomal protein S4-A
Chain SZ
40S ribosomal protein S24-A

Coloring options:


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