3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
AAUGUAAAUACCU
Length
13 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7D63_017 not in the Motif Atlas
Geometric match to HL_4V88_199
Geometric discrepancy: 0.1497
The information below is about HL_4V88_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_05304.1
Basepair signature
cWW-cWW-F-F-tSH-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

7D63|1|SA|A|520
7D63|1|SA|A|521
7D63|1|SA|U|522
7D63|1|SA|G|523
7D63|1|SA|U|524
7D63|1|SA|A|525
7D63|1|SA|A|526
7D63|1|SA|A|527
7D63|1|SA|U|528
7D63|1|SA|A|529
7D63|1|SA|C|530
7D63|1|SA|C|531
7D63|1|SA|U|532

Current chains

Chain SA
18S rRNA

Nearby chains

Chain RB
U3 small nucleolar ribonucleoprotein protein LCP5
Chain RJ
Ribosome biogenesis protein BMS1
Chain SK
40S ribosomal protein S9-A
Chain SZ
40S ribosomal protein S24-A

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