3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
UUUUUUAAUG
Length
10 nucleotides
Bulged bases
7D63|1|SA|U|1058, 7D63|1|SA|U|1059
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7D63_023 not in the Motif Atlas
Geometric match to HL_4YAZ_004
Geometric discrepancy: 0.2629
The information below is about HL_4YAZ_004
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_90436.1
Basepair signature
cWW-F
Number of instances in this motif group
37

Unit IDs

7D63|1|SA|U|1055
7D63|1|SA|U|1056
7D63|1|SA|U|1057
7D63|1|SA|U|1058
7D63|1|SA|U|1059
7D63|1|SA|U|1060
7D63|1|SA|A|1061
7D63|1|SA|A|1062
7D63|1|SA|U|1063
7D63|1|SA|G|1064

Current chains

Chain SA
18S rRNA

Nearby chains

Chain 5C
U3 small nucleolar RNA-associated protein 7
Chain RE
U3 small nucleolar RNA-associated protein 22
Chain RF
Ribosomal RNA-processing protein 7
Chain SC
40S ribosomal protein S1-A
Chain Sc
40S ribosomal protein S27-A

Coloring options:


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