HL_7D63_026

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

GUGCAUUGAUGC

Length

12 nucleotides

Bulged bases

7D63|1|SA|A|1436

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D63_026 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1932

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7D63|1|SA|G|1271
7D63|1|SA|U|1272
7D63|1|SA|G|1273
7D63|1|SA|C|1274
7D63|1|SA|A|1275
7D63|1|SA|U|1276
7D63|1|SA|U|1434
7D63|1|SA|G|1435
7D63|1|SA|A|1436
7D63|1|SA|U|1437
7D63|1|SA|G|1438
7D63|1|SA|C|1439

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RG

Ribosomal RNA small subunit methyltransferase NEP1

Chain RS

Essential nuclear protein 1