HL_7D63_028

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

7D63|1|SA|U|1558, 7D63|1|SA|A|1559

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D63|1|SA|A|1550
7D63|1|SA|U|1551
7D63|1|SA|U|1552
7D63|1|SA|G|1553
7D63|1|SA|U|1554
7D63|1|SA|A|1555
7D63|1|SA|A|1556
7D63|1|SA|U|1557
7D63|1|SA|U|1558
7D63|1|SA|A|1559
7D63|1|SA|U|1560
7D63|1|SA|U|1561

Current chains

Chain SA

18S rRNA

Nearby chains

Chain 5D

U3 small nucleolar RNA-associated protein 11

Chain 5E

U3 small nucleolar RNA-associated protein MPP10

Chain RJ

Ribosome biogenesis protein BMS1

Chain ST

40S ribosomal protein S18-A