HL_7D63_033

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

GGGCAACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D63_033 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2521

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7D63|1|SA|G|1697
7D63|1|SA|G|1698
7D63|1|SA|G|1699
7D63|1|SA|C|1700
7D63|1|SA|A|1701
7D63|1|SA|A|1702
7D63|1|SA|C|1703
7D63|1|SA|U|1704

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RE

U3 small nucleolar RNA-associated protein 22