3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
GGGCAACU
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7D63_033 not in the Motif Atlas
Geometric match to HL_3RG5_006
Geometric discrepancy: 0.2521
The information below is about HL_3RG5_006
Detailed Annotation
tRNA anticodon loop
Broad Annotation
tRNA anticodon loop
Motif group
HL_45359.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

7D63|1|SA|G|1697
7D63|1|SA|G|1698
7D63|1|SA|G|1699
7D63|1|SA|C|1700
7D63|1|SA|A|1701
7D63|1|SA|A|1702
7D63|1|SA|C|1703
7D63|1|SA|U|1704

Current chains

Chain SA
18S rRNA

Nearby chains

Chain RE
U3 small nucleolar RNA-associated protein 22

Coloring options:


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