HL_7D6Z_028

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_028 not in the Motif Atlas

Homologous match to HL_5J7L_152

Geometric discrepancy: 0.089

The information below is about HL_5J7L_152

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7D6Z|1|A|G|629
7D6Z|1|A|G|630
7D6Z|1|A|A|631
7D6Z|1|A|A|632
7D6Z|1|A|A|633
7D6Z|1|A|C|634

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain d

50S ribosomal protein L35