HL_7D6Z_063

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7D6Z|1|A|A|2268, 7D6Z|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_063 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0755

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7D6Z|1|A|C|2264
7D6Z|1|A|U|2265
7D6Z|1|A|A|2266
7D6Z|1|A|A|2267
7D6Z|1|A|A|2268
7D6Z|1|A|G|2269
7D6Z|1|A|A|2270
7D6Z|1|A|G|2271
7D6Z|1|A|U|2272
7D6Z|1|A|A|2273
7D6Z|1|A|A|2274
7D6Z|1|A|C|2275
7D6Z|1|A|G|2276

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27