HL_7D6Z_075

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7D6Z|1|A|G|2751, 7D6Z|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_075 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0955

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7D6Z|1|A|C|2745
7D6Z|1|A|U|2746
7D6Z|1|A|G|2747
7D6Z|1|A|A|2748
7D6Z|1|A|A|2749
7D6Z|1|A|A|2750
7D6Z|1|A|G|2751
7D6Z|1|A|C|2752
7D6Z|1|A|A|2753
7D6Z|1|A|U|2754
7D6Z|1|A|C|2755
7D6Z|1|A|U|2756
7D6Z|1|A|A|2757
7D6Z|1|A|A|2758
7D6Z|1|A|G|2759

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13

Chain e

50S ribosomal protein L36