HL_7D6Z_087

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_087 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.1101

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7D6Z|1|f|U|296
7D6Z|1|f|G|297
7D6Z|1|f|A|298
7D6Z|1|f|G|299
7D6Z|1|f|A|300
7D6Z|1|f|G|301

Current chains

Chain f

16S ribosomal rRNA

Nearby chains

Chain k

30S ribosomal protein S4

Chain l

30S ribosomal protein S5

Chain s

30S ribosomal protein S12

Chain x

30S ribosomal protein S17