HL_7D6Z_098

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

7D6Z|1|f|U|842, 7D6Z|1|f|G|844, 7D6Z|1|f|A|845

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D6Z_098 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3614

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7D6Z|1|f|C|840
7D6Z|1|f|C|841
7D6Z|1|f|U|842
7D6Z|1|f|U|843
7D6Z|1|f|G|844
7D6Z|1|f|A|845
7D6Z|1|f|G|846

Current chains

Chain f

16S ribosomal rRNA

Nearby chains

Chain y

30S ribosomal protein S18