HL_7D80_004

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_004 not in the Motif Atlas

Geometric match to HL_5J7L_214

Geometric discrepancy: 0.3166

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7D80|1|A|G|136
7D80|1|A|U|137
7D80|1|A|U|138
7D80|1|A|U|139
7D80|1|A|C|140
7D80|1|A|G|141
7D80|1|A|A|142
7D80|1|A|C|143

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L23