7D80 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7D80_001 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_7D80_002 | 1/A/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_7D80_003 | 1/A/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_7D80_004 | 1/A/136:143 | No text annotation | geometric HL_5J7L_214 HL_08100.1 | |
| HL_7D80_005 | 1/A/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_7D80_006 | 1/A/188:208 | No text annotation | ||
| HL_7D80_007 | 1/A/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_7D80_008 | 1/A/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_7D80_009 | 1/A/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_01609.3 | |
| HL_7D80_010 | 1/A/319:323 | No text annotation | homologous HL_7A0S_011 HL_75660.5 | |
| HL_7D80_011 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_7D80_129 | 1/A/378:396 | No text annotation | ||
| HL_7D80_012 | 1/A/381:393 | No text annotation | ||
| HL_7D80_013 | 1/A/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_7D80_014 | 1/A/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
| HL_7D80_130 | 1/A/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_7D80_131 | 1/A/543:550 | No text annotation | homologous HL_5J7L_149 HL_09452.1 | |
| HL_7D80_017 | 1/A/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.6 | |
| HL_7D80_018 | 1/A/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_7D80_019 | 1/A/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_7D80_020 | 1/A/641:647 | No text annotation | homologous HL_5J7L_153 HL_13529.1 | |
| HL_7D80_021 | 1/A/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_7D80_022 | 1/A/744:753 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_7D80_023 | 1/A/778:786 | No text annotation | geometric HL_6CF2_001 HL_87553.1 | |
| HL_7D80_024 | 1/A/826:831 | No text annotation | homologous HL_4WF9_025 HL_55195.3 | |
| HL_7D80_025 | 1/A/879:898 | No text annotation | ||
| HL_7D80_026 | 1/A/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.7 | |
| HL_7D80_116 | 1/A/978:985 | No text annotation | homologous HL_5J7L_160 HL_42998.2 | |
| HL_7D80_028 | 1/A/1062:1076 | No text annotation | ||
| HL_7D80_029 | 1/A/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_7D80_030 | 1/A/1165:1184 | No text annotation | ||
| HL_7D80_031 | 1/A/1222:1227 | GNRA | homologous HL_4WF9_031 HL_37824.7 | |
| HL_7D80_032 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.6 | |
| HL_7D80_033 | 1/A/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_7D80_117 | 1/A/1357:1374 | No text annotation | ||
| HL_7D80_034 | 1/A/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_7D80_132 | 1/A/1389:1398 | No text annotation | homologous HL_4WF9_035 HL_81545.2 | |
| HL_7D80_036 | 1/A/1451:1459 | Mini UNCG with extended bulge | geometric HL_5J7L_169 HL_22622.1 | |
| HL_7D80_037 | 1/A/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_7D80_133 | 1/A/1532:1539 | No text annotation | ||
| HL_7D80_039 | 1/A/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_7D80_040 | 1/A/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_89567.2 | |
| HL_7D80_041 | 1/A/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_7D80_042 | 1/A/1691:1696 | UNCG | homologous HL_4WF9_040 HL_34617.5 | |
| HL_7D80_043 | 1/A/1727:1733 | No text annotation | geometric HL_5J7L_018 HL_37344.1 | |
| HL_7D80_044 | 1/A/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_7D80_134 | 1/A/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_7D80_046 | 1/A/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_7D80_047 | 1/A/1868:1873 | GNRA | geometric HL_1L9A_002 HL_37824.7 | |
| HL_7D80_048 | 1/A/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_7D80_135 | 1/A/1947:1959 | No text annotation | ||
| HL_7D80_049 | 1/A/1948:1958 | No text annotation | ||
| HL_7D80_050 | 1/A/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.2 | |
| HL_7D80_051 | 1/A/2142:2149 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_7D80_052 | 1/A/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_7D80_053 | 1/A/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_7D80_054 | 1/A/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_7D80_055 | 1/A/2303:2313 | No text annotation | homologous HL_5J7L_188 NA | |
| HL_7D80_136 | 1/A/2324:2331 | Pseudoknot geometry | homologous HL_4WF9_052 HL_93324.4 | |
| HL_7D80_122 | 1/A/2353:2364 | No text annotation | ||
| HL_7D80_057 | 1/A/2355:2362 | GNRA with extra cWW | homologous HL_7A0S_056 HL_04259.3 | |
| HL_7D80_058 | 1/A/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.7 | |
| HL_7D80_059 | 1/A/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_7D80_060 | 1/A/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_7D80_061 | 1/A/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.3 | |
| HL_7D80_062 | 1/A/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
| HL_7D80_063 | 1/A/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_7D80_064 | 1/A/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.7 | |
| HL_7D80_065 | 1/A/2697:2710 | No text annotation | geometric HL_5TBW_226 NA | |
| HL_7D80_066 | 1/A/2745:2759 | No text annotation | homologous HL_4WF9_062 HL_74055.2 | |
| HL_7D80_067 | 1/A/2796:2799 | No text annotation | geometric HL_7RQB_009 NA | |
| HL_7D80_068 | 1/A/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_7D80_069 | 1/A/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 | |
| HL_7D80_070 | 1/B/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_7D80_124 | 1/B/62:105 | No text annotation | ||
| HL_7D80_071 | 1/B/76:92 | No text annotation | ||
| HL_7D80_072 | 1/B/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_7D80_073 | 1/B/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_7D80_074 | 1/B/203:215 | No text annotation | ||
| HL_7D80_075 | 1/B/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_7D80_076 | 1/B/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_7D80_077 | 1/B/320:333 | No text annotation | homologous HL_6CZR_079 NA | |
| HL_7D80_078 | 1/B/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_7D80_079 | 1/B/378:386 | No text annotation | ||
| HL_7D80_137 | 1/B/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_7D80_081 | 1/B/450:483 | No text annotation | ||
| HL_7D80_082 | 1/B/521:528 | No text annotation | homologous HL_5J7L_013 NA | |
| HL_7D80_138 | 1/B/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_7D80_084 | 1/B/689:698 | No text annotation | geometric HL_5J7L_015 HL_75293.5 | |
| HL_7D80_085 | 1/B/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_7D80_086 | 1/B/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_7D80_087 | 1/B/840:846 | No text annotation | ||
| HL_7D80_088 | 1/B/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.7 | |
| HL_7D80_089 | 1/B/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_7D80_090 | 1/B/962:973 | No text annotation | geometric HL_2Y9H_005 HL_86870.1 | |
| HL_7D80_091 | 1/B/1009:1020 | No text annotation | homologous HL_5J7L_216 HL_78284.1 | |
| HL_7D80_092 | 1/B/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_7D80_093 | 1/B/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_7D80_094 | 1/B/1134:1140 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_7D80_095 | 1/B/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_7D80_096 | 1/B/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_7D80_097 | 1/B/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_7D80_098 | 1/B/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_7D80_099 | 1/B/1449:1454 | UNCG | geometric HL_4WF9_040 HL_34617.5 | |
| HL_7D80_100 | 1/B/1514:1521 | tRNA D-loop | geometric HL_4V9K_033 HL_48417.5 | |
| HL_7D80_139 | 1/a/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
| HL_7D80_106 | 1/a/38:44 | No text annotation | geometric HL_5J7L_203 HL_47787.2 | |
| HL_7D80_107 | 1/a/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_7D80_108 | 1/y/13:22 | tRNA D-loop | homologous HL_6JXM_001 HL_20811.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7D80_111 | No text annotation | ||
| HL_7D80_112 | No text annotation | ||
| HL_7D80_113 | No text annotation | ||
| HL_7D80_114 | No text annotation | ||
| HL_7D80_115 | No text annotation | ||
| HL_7D80_015 | Anticodon loop related | ||
| HL_7D80_016 | No text annotation | ||
| HL_7D80_027 | No text annotation | ||
| HL_7D80_118 | No text annotation | ||
| HL_7D80_035 | No text annotation | ||
| HL_7D80_038 | No text annotation | ||
| HL_7D80_119 | GNRA with extra cWW | ||
| HL_7D80_045 | No text annotation | ||
| HL_7D80_120 | No text annotation | ||
| HL_7D80_121 | No text annotation | ||
| HL_7D80_056 | tRNA anticodon loop | ||
| HL_7D80_123 | No text annotation | ||
| HL_7D80_125 | No text annotation | ||
| HL_7D80_080 | No text annotation | ||
| HL_7D80_083 | No text annotation | ||
| HL_7D80_126 | GNRA with near cWW | ||
| HL_7D80_127 | No text annotation | ||
| HL_7D80_101 | No text annotation | ||
| HL_7D80_102 | No text annotation | ||
| HL_7D80_103 | No text annotation | ||
| HL_7D80_104 | tRNA D-loop | ||
| HL_7D80_105 | No text annotation | ||
| HL_7D80_128 | No text annotation | ||
| HL_7D80_109 | No text annotation | ||
| HL_7D80_110 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7D80_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | geometric IL_7A0S_001 IL_04021.2 | |
| IL_7D80_208 | 1/A/32:35, 1/A/445:473 | No text annotation | ||
| IL_7D80_002 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_7D80_209 | 1/A/43:44, 1/A/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.2 | |
| IL_7D80_004 | 1/A/81:85, 1/A/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_7D80_005 | 1/A/183:184, 1/A/212:214 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
| IL_7D80_006 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_7D80_007 | 1/A/269:271, 1/A/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_7D80_210 | 1/A/274:281, 1/A/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_7D80_211 | 1/A/293:295, 1/A/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_7D80_010 | 1/A/481:484, 1/A/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_7D80_011 | 1/A/535:539, 1/A/554:558 | Triple sheared | geometric IL_5J7L_274 IL_17948.2 | |
| IL_7D80_012 | 1/A/564:566, 1/A/575:577 | Isolated non-canonical cWW pair | geometric IL_6CZR_157 NA | |
| IL_7D80_161 | 1/A/564:566, 1/A/575:578 | No text annotation | ||
| IL_7D80_013 | 1/A/605:610, 1/A/618:623 | No text annotation | ||
| IL_7D80_014 | 1/A/672:674, 1/A/806:808 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 IL_87907.2 | |
| IL_7D80_015 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_7D80_212 | 1/A/674:680, 1/A/797:806 | No text annotation | ||
| IL_7D80_016 | 1/A/697:698, 1/A/763:765 | Single bulged A | geometric IL_4V9F_025 IL_31462.5 | |
| IL_7D80_017 | 1/A/701:707, 1/A/724:731 | No text annotation | ||
| IL_7D80_018 | 1/A/738:740, 1/A/757:758 | Major groove platform | homologous IL_4WF9_026 IL_48076.6 | |
| IL_7D80_019 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases | geometric IL_4V9F_030 IL_57881.1 | |
| IL_7D80_020 | 1/A/837:838, 1/A/940:942 | Single stack bend | homologous IL_5J7L_266 IL_90729.1 | |
| IL_7D80_165 | 1/A/840:848, 1/A/930:938 | No text annotation | ||
| IL_7D80_021 | 1/A/843:848, 1/A/930:935 | No text annotation | ||
| IL_7D80_213 | 1/A/850:851, 1/A/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_7D80_023 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_7D80_024 | 1/A/862:868, 1/A/909:915 | No text annotation | ||
| IL_7D80_025 | 1/A/870:872, 1/A/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_7D80_026 | 1/A/875:879, 1/A/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_7D80_027 | 1/A/993:996, 1/A/1159:1161 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_57744.1 | |
| IL_7D80_166 | 1/A/996:1002, 1/A/1153:1159 | No text annotation | ||
| IL_7D80_028 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_7D80_029 | 1/A/1003:1011, 1/A/1150:1152 | No text annotation | ||
| IL_7D80_214 | 1/A/1004:1013, 1/A/1149:1151 | No text annotation | ||
| IL_7D80_030 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_7D80_215 | 1/A/1016:1024, 1/A/1140:1146 | No text annotation | ||
| IL_7D80_031 | 1/A/1017:1024, 1/A/1140:1145 | No text annotation | ||
| IL_7D80_032 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_7D80_033 | 1/A/1030:1034, 1/A/1121:1124 | Tandem non-canonical cWW pairs | geometric IL_5J7L_033 IL_85033.2 | |
| IL_7D80_216 | 1/A/1031:1035, 1/A/1120:1123 | No text annotation | geometric IL_8CRE_434 IL_85033.2 | |
| IL_7D80_034 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 IL_85033.2 | |
| IL_7D80_036 | 1/A/1043:1051, 1/A/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_7D80_037 | 1/A/1196:1199, 1/A/1246:1250 | Tandem non-canonical cWW pairs | geometric IL_4WF9_110 IL_51479.1 | |
| IL_7D80_038 | 1/A/1202:1208, 1/A/1238:1243 | No text annotation | ||
| IL_7D80_171 | 1/A/1202:1216, 1/A/1233:1243 | No text annotation | ||
| IL_7D80_039 | 1/A/1208:1216, 1/A/1233:1238 | No text annotation | ||
| IL_7D80_040 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_7D80_041 | 1/A/1319:1323, 1/A/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_7D80_217 | 1/A/1351:1353, 1/A/1379:1380 | Single stack bend | geometric IL_6FZ0_001 IL_90729.1 | |
| IL_7D80_218 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN | geometric IL_5J7L_292 IL_89021.2 | |
| IL_7D80_219 | 1/A/1353:1355, 1/A/1376:1379 | No text annotation | ||
| IL_7D80_043 | 1/A/1357:1362, 1/A/1369:1374 | tSH-tHW-tHS-cWW | geometric IL_3LQX_002 IL_76308.6 | |
| IL_7D80_173 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_7D80_045 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN | geometric IL_5J7L_295 IL_38507.2 | |
| IL_7D80_220 | 1/A/1431:1435, 1/A/1557:1562 | No text annotation | ||
| IL_7D80_047 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW | homologous IL_7A0S_053 IL_99646.2 | |
| IL_7D80_221 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U | homologous IL_5J7L_298 IL_89505.4 | |
| IL_7D80_222 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_7D80_050 | 1/A/1474:1478, 1/A/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_7D80_051 | 1/A/1481:1482, 1/A/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_7D80_052 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.5 | |
| IL_7D80_176 | 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_7D80_054 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_7D80_055 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_7D80_223 | 1/A/1663:1674, 1/A/1990:1997 | No text annotation | ||
| IL_7D80_056 | 1/A/1666:1674, 1/A/1990:1994 | No text annotation | geometric IL_4WF9_117 IL_22854.4 | |
| IL_7D80_178 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_7D80_058 | 1/A/1712:1718, 1/A/1742:1746 | No text annotation | ||
| IL_7D80_179 | 1/A/1720:1724, 1/A/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_7D80_060 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.5 | |
| IL_7D80_061 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_7D80_062 | 1/A/1837:1840, 1/A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_95583.2 | |
| IL_7D80_063 | 1/A/1841:1842, 1/A/1898:1901 | Major groove intercalation | homologous IL_4WF9_071 IL_82107.4 | |
| IL_7D80_181 | 1/A/1841:1844, 1/A/1896:1901 | No text annotation | geometric IL_1GID_008 NA | |
| IL_7D80_064 | 1/A/1846:1849, 1/A/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.4 | |
| IL_7D80_224 | 1/A/1851:1860, 1/A/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_7D80_065 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN | homologous IL_4WF9_075 IL_77691.5 | |
| IL_7D80_066 | 1/A/1933:1945, 1/A/1961:1967 | No text annotation | ||
| IL_7D80_067 | 1/A/2050:2053, 1/A/2616:2618 | No text annotation | geometric IL_6CZR_136 NA | |
| IL_7D80_068 | 1/A/2053:2057, 1/A/2611:2616 | No text annotation | ||
| IL_7D80_069 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U | geometric IL_7RQB_080 NA | |
| IL_7D80_070 | 1/A/2069:2072, 1/A/2437:2442 | Tandem non-canonical cWW pairs | geometric IL_4V88_429 NA | |
| IL_7D80_071 | 1/A/2081:2084, 1/A/2235:2239 | No text annotation | ||
| IL_7D80_072 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_7D80_185 | 1/A/2103:2105, 1/A/2184:2186 | Isolated non-canonical cWW pair | geometric IL_3RG5_002 IL_28037.2 | |
| IL_7D80_225 | 1/A/2107:2122, 1/A/2176:2182 | No text annotation | ||
| IL_7D80_186 | 1/A/2122:2136, 1/A/2155:2176 | No text annotation | ||
| IL_7D80_187 | 1/A/2138:2140, 1/A/2151:2153 | Isolated near basepair | geometric IL_4V88_406 NA | |
| IL_7D80_076 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_7D80_077 | 1/A/2348:2353, 1/A/2364:2369 | No text annotation | ||
| IL_7D80_078 | 1/A/2401:2403, 1/A/2414:2415 | Major groove platform | homologous IL_7A0S_082 IL_48076.6 | |
| IL_7D80_079 | 1/A/2453:2454, 1/A/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_7D80_226 | 1/A/2453:2461, 1/A/2489:2500 | No text annotation | ||
| IL_7D80_080 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform | geometric IL_4WF9_090 IL_48076.6 | |
| IL_7D80_081 | 1/A/2455:2461, 1/A/2489:2496 | No text annotation | ||
| IL_7D80_082 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_7D80_083 | 1/A/2508:2513, 1/A/2571:2580 | No text annotation | ||
| IL_7D80_084 | 1/A/2522:2523, 1/A/2540:2543 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_02555.1 | |
| IL_7D80_085 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.5 | |
| IL_7D80_086 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_7D80_087 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.4 | |
| IL_7D80_195 | 1/A/2676:2680, 1/A/2727:2732 | No text annotation | ||
| IL_7D80_088 | 1/A/2680:2684, 1/A/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_7D80_227 | 1/A/2680:2686, 1/A/2723:2727 | No text annotation | ||
| IL_7D80_089 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_7D80_228 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_7D80_091 | 1/A/2795:2796, 1/A/2799:2801 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_7D80_092 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_7D80_093 | 1/A/2838:2839, 1/A/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_7D80_229 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_7D80_095 | 1/A/2847:2852, 1/A/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_7D80_230 | 1/B/30:32, 1/B/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_7D80_097 | 1/B/44:45, 1/B/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.5 | |
| IL_7D80_098 | 1/B/47:52, 1/B/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_7D80_099 | 1/B/54:56, 1/B/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_7D80_231 | 1/B/126:131, 1/B/231:235 | No text annotation | ||
| IL_7D80_100 | 1/B/127:131, 1/B/231:234 | Tandem non-canonical cWW pairs | geometric IL_4V88_429 NA | |
| IL_7D80_101 | 1/B/132:136, 1/B/227:230 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
| IL_7D80_102 | 1/B/242:247, 1/B/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_7D80_103 | 1/B/249:252, 1/B/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_7D80_104 | 1/B/292:293, 1/B/304:308 | C-loop | homologous IL_5J7L_016 IL_03109.3 | |
| IL_7D80_232 | 1/B/371:375, 1/B/389:390 | C-loop | homologous IL_6CZR_127 NA | |
| IL_7D80_106 | 1/B/375:378, 1/B/386:389 | No text annotation | geometric IL_4WSM_372 IL_09990.4 | |
| IL_7D80_107 | 1/B/409:416, 1/B/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_7D80_108 | 1/B/444:449, 1/B/486:490 | No text annotation | ||
| IL_7D80_109 | 1/B/449:450, 1/B/483:486 | No text annotation | ||
| IL_7D80_110 | 1/B/504:511, 1/B/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_7D80_111 | 1/B/515:521, 1/B/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_7D80_112 | 1/B/580:584, 1/B/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_7D80_113 | 1/B/594:596, 1/B/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_7D80_114 | 1/B/597:598, 1/B/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_7D80_233 | 1/B/605:612, 1/B/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_7D80_116 | 1/B/654:655, 1/B/751:754 | Major groove platform; stack outside cWW | geometric IL_5J7L_031 IL_50694.7 | |
| IL_7D80_117 | 1/B/658:659, 1/B/746:748 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_7D80_234 | 1/B/660:666, 1/B/740:745 | No text annotation | ||
| IL_7D80_235 | 1/B/684:688, 1/B/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_7D80_120 | 1/B/774:778, 1/B/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_7D80_121 | 1/B/779:783, 1/B/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_7D80_122 | 1/B/887:894, 1/B/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_7D80_123 | 1/B/922:923, 1/B/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_7D80_124 | 1/B/925:927, 1/B/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_7D80_237 | 1/B/925:928, 1/B/1389:1391 | Isolated non-canonical cWW pair | geometric IL_1YZ9_002 IL_87907.2 | |
| IL_7D80_202 | 1/B/933:935, 1/B/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_7D80_203 | 1/B/950:985, 1/B/1220:1231 | No text annotation | ||
| IL_7D80_126 | 1/B/951:954, 1/B/1226:1230 | No text annotation | ||
| IL_7D80_127 | 1/B/993:997, 1/B/1044:1045 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
| IL_7D80_128 | 1/B/998:1001, 1/B/1039:1043 | No text annotation | ||
| IL_7D80_129 | 1/B/1002:1006, 1/B/1023:1038 | No text annotation | ||
| IL_7D80_130 | 1/B/1048:1050, 1/B/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_7D80_238 | 1/B/1048:1056, 1/B/1204:1209 | No text annotation | ||
| IL_7D80_131 | 1/B/1050:1056, 1/B/1204:1208 | No text annotation | ||
| IL_7D80_132 | 1/B/1057:1058, 1/B/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_7D80_133 | 1/B/1060:1061, 1/B/1195:1197 | Single bulged A | geometric IL_5J7L_049 IL_31462.5 | |
| IL_7D80_134 | 1/B/1061:1063, 1/B/1193:1195 | Isolated non-canonical cWW pair | homologous IL_6CZR_157 NA | |
| IL_7D80_135 | 1/B/1123:1128, 1/B/1144:1150 | No text annotation | ||
| IL_7D80_136 | 1/B/1129:1134, 1/B/1140:1143 | No text annotation | homologous IL_6CZR_159 NA | |
| IL_7D80_137 | 1/B/1158:1161, 1/B/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_7D80_138 | 1/B/1255:1258, 1/B/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_7D80_139 | 1/B/1259:1263, 1/B/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_7D80_140 | 1/B/1303:1309, 1/B/1328:1334 | No text annotation | ||
| IL_7D80_141 | 1/B/1399:1401, 1/B/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_7D80_142 | 1/B/1401:1404, 1/B/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7D80_143 | 1/B/1405:1407, 1/B/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5MWI_002 IL_87907.2 | |
| IL_7D80_239 | 1/B/1407:1409, 1/B/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_31531.3 | |
| IL_7D80_145 | 1/B/1412:1414, 1/B/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_7D80_146 | 1/B/1416:1419, 1/B/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_7D80_147 | 1/B/1430:1435, 1/B/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_7D80_240 | 1/B/1440:1442, 1/B/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.5 | |
| IL_7D80_241 | 1/B/1445:1448, 1/B/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_7D80_150 | 1/B/1508:1509, 1/B/1526:1528 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_7D80_151 | 1/a/17:18, 1/a/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.5 | |
| IL_7D80_152 | 1/a/23:28, 1/a/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_7D80_153 | 1/a/30:32, 1/a/50:54 | No text annotation | homologous IL_4WF9_114 NA | |
| IL_7D80_242 | 1/a/34:38, 1/a/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_7D80_155 | 1/a/71:79, 1/a/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7D80_156 | No text annotation | ||
| IL_7D80_157 | No text annotation | ||
| IL_7D80_003 | No text annotation | ||
| IL_7D80_158 | Kink-turn | ||
| IL_7D80_159 | No text annotation | ||
| IL_7D80_008 | No text annotation | ||
| IL_7D80_009 | No text annotation | ||
| IL_7D80_160 | No text annotation | ||
| IL_7D80_162 | No text annotation | ||
| IL_7D80_163 | No text annotation | ||
| IL_7D80_164 | No text annotation | ||
| IL_7D80_022 | No text annotation | ||
| IL_7D80_167 | No text annotation | ||
| IL_7D80_168 | No text annotation | ||
| IL_7D80_169 | Tandem non-canonical cWW pairs with near WC pairs | ||
| IL_7D80_035 | Isolated cWH basepair | ||
| IL_7D80_170 | No text annotation | ||
| IL_7D80_042 | No text annotation | ||
| IL_7D80_172 | No text annotation | ||
| IL_7D80_044 | No text annotation | ||
| IL_7D80_046 | No text annotation | ||
| IL_7D80_174 | Partly complementary | ||
| IL_7D80_048 | Tandem non-canonical cWW pairs | ||
| IL_7D80_049 | No text annotation | ||
| IL_7D80_175 | No text annotation | ||
| IL_7D80_053 | Triple sheared related | ||
| IL_7D80_177 | No text annotation | ||
| IL_7D80_057 | No text annotation | ||
| IL_7D80_059 | Triple sheared with non-canonical cWW | ||
| IL_7D80_180 | No text annotation | ||
| IL_7D80_182 | No text annotation | ||
| IL_7D80_183 | No text annotation | ||
| IL_7D80_184 | Isolated non-canonical cWW pair | ||
| IL_7D80_073 | Triple non-canonical cWW pairs | ||
| IL_7D80_074 | No text annotation | ||
| IL_7D80_075 | No text annotation | ||
| IL_7D80_188 | No text annotation | ||
| IL_7D80_189 | No text annotation | ||
| IL_7D80_190 | No text annotation | ||
| IL_7D80_191 | No text annotation | ||
| IL_7D80_192 | No text annotation | ||
| IL_7D80_193 | No text annotation | ||
| IL_7D80_194 | No text annotation | ||
| IL_7D80_196 | No text annotation | ||
| IL_7D80_090 | No text annotation | ||
| IL_7D80_094 | No text annotation | ||
| IL_7D80_096 | Tandem non-canonical cWW pairs | ||
| IL_7D80_197 | No text annotation | ||
| IL_7D80_198 | No text annotation | ||
| IL_7D80_105 | No text annotation | ||
| IL_7D80_115 | No text annotation | ||
| IL_7D80_118 | No text annotation | ||
| IL_7D80_119 | No text annotation | ||
| IL_7D80_199 | Isolated non-canonical cWW pair | ||
| IL_7D80_200 | No text annotation | ||
| IL_7D80_236 | Isolated non-canonical cWW pair | ||
| IL_7D80_201 | Partly complementary | ||
| IL_7D80_125 | No text annotation | ||
| IL_7D80_204 | No text annotation | ||
| IL_7D80_205 | No text annotation | ||
| IL_7D80_206 | No text annotation | ||
| IL_7D80_144 | No text annotation | ||
| IL_7D80_207 | Tandem non-canonical cWW pairs | ||
| IL_7D80_148 | Major groove platform with extra cWW | ||
| IL_7D80_149 | No text annotation | ||
| IL_7D80_154 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7D80_022 | 1/A/24:31, 1/A/474:484, 1/A/496:516 | No text annotation | ||
| J3_7D80_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | homologous J3_5J7L_036 J3_60031.2 | |
| J3_7D80_044 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_7D80_024 | 1/A/297:301, 1/A/316:325, 1/A/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_7D80_045 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_7D80_004 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation | homologous J3_4WF9_003 J3_44724.7 | |
| J3_7D80_026 | 1/A/698:707, 1/A/724:736, 1/A/760:763 | No text annotation | ||
| J3_7D80_046 | 1/A/1055:1062, 1/A/1076:1090, 1/A/1101:1104 | No text annotation | ||
| J3_7D80_005 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_7D80_006 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_7D80_047 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_7D80_029 | 1/A/1423:1429, 1/A/1564:1565, 1/A/1568:1575 | No text annotation | ||
| J3_7D80_030 | 1/A/1771:1794, 1/A/1825:1830, 1/A/1975:1980 | No text annotation | ||
| J3_7D80_007 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_7D80_031 | 1/A/2091:2093, 1/A/2196:2204, 1/A/2220:2228 | No text annotation | ||
| J3_7D80_008 | 1/A/2282:2284, 1/A/2384:2397, 1/A/2419:2427 | No text annotation | ||
| J3_7D80_032 | 1/A/2293:2299, 1/A/2317:2323, 1/A/2332:2339 | No text annotation | ||
| J3_7D80_009 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation | ||
| J3_7D80_010 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation | ||
| J3_7D80_011 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_7D80_012 | 1/A/2811:2815, 1/A/2831:2836, 1/A/2882:2889 | No text annotation | ||
| J3_7D80_048 | 1/B/46:47, 1/B/361:369, 1/B/392:395 | No text annotation | ||
| J3_7D80_014 | 1/B/586:588, 1/B/651:654, 1/B/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_7D80_049 | 1/B/586:588, 1/B/651:655, 1/B/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_7D80_037 | 1/B/672:677, 1/B/713:725, 1/B/732:734 | No text annotation | ||
| J3_7D80_015 | 1/B/826:829, 1/B/857:861, 1/B/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_7D80_038 | 1/B/936:939, 1/B/1344:1350, 1/B/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_7D80_016 | 1/B/954:962, 1/B/973:985, 1/B/1220:1226 | No text annotation | homologous J3_6CZR_020 NA | |
| J3_7D80_017 | 1/B/989:993, 1/B/1045:1047, 1/B/1210:1216 | No text annotation | ||
| J3_7D80_039 | 1/B/990:997, 1/B/1044:1047, 1/B/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_7D80_040 | 1/B/1061:1068, 1/B/1107:1113, 1/B/1187:1195 | No text annotation | ||
| J3_7D80_018 | 1/B/1063:1068, 1/B/1107:1113, 1/B/1187:1193 | No text annotation | geometric J3_4LFB_007 J3_08394.3 | |
| J3_7D80_041 | 1/B/1073:1074, 1/B/1083:1087, 1/B/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_7D80_020 | 1/B/1116:1118, 1/B/1155:1158, 1/B/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_7D80_050 | 1/B/1116:1118, 1/B/1155:1161, 1/B/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_7D80_051 | 1/a/10:16, 1/a/68:70, 1/a/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J4_7D80_015 | 1/A/268:271, 1/A/366:375, 1/A/399:406, 1/A/421:424 | No text annotation | ||
| J4_7D80_002 | 1/A/601:610, 1/A/618:628, 1/A/635:638, 1/A/650:656 | No text annotation | ||
| J4_7D80_016 | 1/A/1270:1279, 1/A/1291:1295, 1/A/1645:1648, 1/A/2009:2010 | No text annotation | ||
| J4_7D80_004 | 1/A/1309:1319, 1/A/1333:1343, 1/A/1404:1405, 1/A/1597:1605 | No text annotation | ||
| J4_7D80_005 | 1/A/1444:1445, 1/A/1466:1467, 1/A/1525:1526, 1/A/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_7D80_017 | 1/A/1674:1682, 1/A/1706:1707, 1/A/1751:1768, 1/A/1984:1990 | No text annotation | ||
| J4_7D80_018 | 1/A/1772:1776, 1/A/1788:1792, 1/A/1827:1830, 1/A/1975:1979 | No text annotation | homologous J4_4WF9_007 J4_61477.5 | |
| J4_7D80_019 | 1/A/1832:1835, 1/A/1905:1906, 1/A/1924:1933, 1/A/1967:1973 | No text annotation | ||
| J4_7D80_020 | 1/A/2285:2290, 1/A/2342:2347, 1/A/2370:2372, 1/A/2381:2383 | No text annotation | ||
| J4_7D80_021 | 1/A/2641:2648, 1/A/2672:2676, 1/A/2732:2742, 1/A/2762:2773 | No text annotation | ||
| J4_7D80_010 | 1/B/58:61, 1/B/106:113, 1/B/314:316, 1/B/337:354 | No text annotation | ||
| J4_7D80_022 | 1/B/115:122, 1/B/239:240, 1/B/286:289, 1/B/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_7D80_023 | 1/B/138:157, 1/B/164:185, 1/B/192:201, 1/B/217:225 | No text annotation | ||
| J4_7D80_013 | 1/B/569:577, 1/B/764:769, 1/B/810:822, 1/B/878:881 | No text annotation | ||
| J4_7D80_024 | 1/B/943:946, 1/B/1235:1253, 1/B/1284:1309, 1/B/1328:1340 | No text annotation | ||
| J5_7D80_006 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:151, 1/A/175:178 | No text annotation | ||
| J5_7D80_002 | 1/A/531:539, 1/A/554:564, 1/A/578:580, 1/A/1260:1262, 1/A/2017:2018 | No text annotation | ||
| J5_7D80_007 | 1/A/582:589, 1/A/668:674, 1/A/806:812, 1/A/1195:1198, 1/A/1247:1258 | No text annotation | ||
| J5_7D80_004 | 1/A/1309:1319, 1/A/1333:1350, 1/A/1381:1386, 1/A/1401:1405, 1/A/1597:1605 | No text annotation | ||
| J5_7D80_008 | 1/B/36:44, 1/B/398:407, 1/B/435:442, 1/B/492:500, 1/B/545:548 | No text annotation | ||
| J6_7D80_002 | 1/A/45:46, 1/A/179:183, 1/A/214:224, 1/A/231:235, 1/A/262:266, 1/A/426:433 | No text annotation | ||
| J7_7D80_003 | 1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2895 | No text annotation | ||
| J7_7D80_004 | 1/A/817:822, 1/A/835:837, 1/A/942:949, 1/A/968:977, 1/A/986:992, 1/A/1162:1165, 1/A/1184:1190 | No text annotation | ||
| J8_7D80_002 | 1/A/2050:2085, 1/A/2234:2246, 1/A/2258:2284, 1/A/2384:2396, 1/A/2420:2453, 1/A/2500:2508, 1/A/2580:2588, 1/A/2606:2618 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7D80_002 | No text annotation | ||
| J3_7D80_023 | No text annotation | ||
| J3_7D80_003 | No text annotation | ||
| J3_7D80_025 | No text annotation | ||
| J3_7D80_027 | No text annotation | ||
| J3_7D80_028 | No text annotation | ||
| J3_7D80_033 | No text annotation | ||
| J3_7D80_034 | No text annotation | ||
| J3_7D80_013 | No text annotation | ||
| J3_7D80_035 | No text annotation | ||
| J3_7D80_036 | No text annotation | ||
| J3_7D80_019 | No text annotation | ||
| J3_7D80_042 | No text annotation | ||
| J3_7D80_043 | No text annotation | ||
| J3_7D80_021 | No text annotation | ||
| J4_7D80_001 | No text annotation | ||
| J4_7D80_003 | No text annotation | ||
| J4_7D80_006 | No text annotation | ||
| J4_7D80_007 | No text annotation | ||
| J4_7D80_008 | No text annotation | ||
| J4_7D80_009 | No text annotation | ||
| J4_7D80_011 | No text annotation | ||
| J4_7D80_012 | No text annotation | ||
| J4_7D80_014 | No text annotation | ||
| J5_7D80_001 | No text annotation | ||
| J5_7D80_003 | No text annotation | ||
| J5_7D80_005 | No text annotation | ||
| J6_7D80_001 | No text annotation | ||
| J7_7D80_001 | No text annotation | ||
| J7_7D80_002 | No text annotation | ||
| J8_7D80_001 | No text annotation |
Coloring options: