7D80 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7D80_001 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_7D80_002 | 1/A/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_7D80_003 | 1/A/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_7D80_005 | 1/A/158:168 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_7D80_006 | 1/A/188:208 | No text annotation | ||
| HL_7D80_007 | 1/A/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_7D80_008 | 1/A/246:252 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_7D80_009 | 1/A/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.1 | |
| HL_7D80_010 | 1/A/319:323 | No text annotation | homologous HL_7A0S_011 HL_75660.6 | |
| HL_7D80_011 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_7D80_129 | 1/A/378:396 | No text annotation | ||
| HL_7D80_012 | 1/A/381:393 | No text annotation | ||
| HL_7D80_013 | 1/A/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_7D80_014 | 1/A/462:467 | GNRA | homologous HL_4WF9_015 HL_34789.1 | |
| HL_7D80_130 | 1/A/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_7D80_017 | 1/A/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 NA | |
| HL_7D80_018 | 1/A/611:617 | No text annotation | homologous HL_5J7L_151 NA | |
| HL_7D80_019 | 1/A/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_7D80_020 | 1/A/641:647 | No text annotation | homologous HL_5J7L_153 NA | |
| HL_7D80_022 | 1/A/744:753 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
| HL_7D80_023 | 1/A/778:786 | No text annotation | geometric HL_6CF2_001 NA | |
| HL_7D80_024 | 1/A/826:831 | No text annotation | homologous HL_4WF9_025 HL_27530.1 | |
| HL_7D80_026 | 1/A/955:962 | GNRA | homologous HL_4WF9_027 HL_34789.1 | |
| HL_7D80_116 | 1/A/978:985 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_7D80_030 | 1/A/1165:1184 | No text annotation | ||
| HL_7D80_031 | 1/A/1222:1227 | GNRA | homologous HL_4WF9_031 HL_34789.1 | |
| HL_7D80_032 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_7D80_033 | 1/A/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_7D80_117 | 1/A/1357:1374 | No text annotation | ||
| HL_7D80_034 | 1/A/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_7D80_132 | 1/A/1389:1398 | No text annotation | homologous HL_4WF9_035 HL_77449.1 | |
| HL_7D80_036 | 1/A/1451:1459 | Mini UNCG with extended bulge | geometric HL_5J7L_169 NA | |
| HL_7D80_037 | 1/A/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_7D80_039 | 1/A/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_90436.1 | |
| HL_7D80_040 | 1/A/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_28592.1 | |
| HL_7D80_041 | 1/A/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_7D80_042 | 1/A/1691:1696 | UNCG | homologous HL_4WF9_040 HL_61337.1 | |
| HL_7D80_044 | 1/A/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_7D80_134 | 1/A/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
| HL_7D80_046 | 1/A/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_7D80_048 | 1/A/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_7D80_135 | 1/A/1947:1959 | No text annotation | ||
| HL_7D80_049 | 1/A/1948:1958 | No text annotation | ||
| HL_7D80_050 | 1/A/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_7D80_052 | 1/A/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_7D80_053 | 1/A/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_11974.1 | |
| HL_7D80_054 | 1/A/2264:2276 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_7D80_136 | 1/A/2324:2331 | Pseudoknot geometry | homologous HL_4WF9_052 HL_52651.1 | |
| HL_7D80_122 | 1/A/2353:2364 | No text annotation | ||
| HL_7D80_057 | 1/A/2355:2362 | GNRA with extra cWW | homologous HL_7A0S_056 HL_45359.1 | |
| HL_7D80_058 | 1/A/2374:2379 | GNRA | homologous HL_5J7L_191 NA | |
| HL_7D80_059 | 1/A/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_7D80_061 | 1/A/2528:2535 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_7D80_062 | 1/A/2551:2557 | No text annotation | homologous HL_5J7L_195 NA | |
| HL_7D80_063 | 1/A/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_7D80_064 | 1/A/2658:2663 | GNRA | homologous HL_5J7L_197 NA | |
| HL_7D80_065 | 1/A/2697:2710 | No text annotation | geometric HL_5TBW_226 NA | |
| HL_7D80_066 | 1/A/2745:2759 | No text annotation | homologous HL_4WF9_062 HL_53269.1 | |
| HL_7D80_068 | 1/A/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_7D80_070 | 1/B/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_7D80_077 | 1/B/320:333 | No text annotation | homologous HL_6CZR_079 NA | |
| HL_7D80_085 | 1/B/726:731 | GNRA | homologous HL_4LFB_016 HL_34789.1 | |
| HL_7D80_086 | 1/B/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.1 | |
| HL_7D80_088 | 1/B/862:867 | GNRA | homologous HL_5J7L_019 NA | |
| HL_7D80_089 | 1/B/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_7D80_090 | 1/B/962:973 | No text annotation | geometric HL_2Y9H_005 HL_51020.1 | |
| HL_7D80_092 | 1/B/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_7D80_139 | 1/a/34:48 | No text annotation | homologous HL_5J7L_215 NA | |
| HL_7D80_106 | 1/a/38:44 | No text annotation | geometric HL_5J7L_203 NA | |
| HL_7D80_107 | 1/a/86:90 | Mini UNCG | homologous HL_5J7L_204 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7D80_111 | No text annotation | ||
| HL_7D80_004 | No text annotation | ||
| HL_7D80_112 | No text annotation | ||
| HL_7D80_113 | No text annotation | ||
| HL_7D80_114 | No text annotation | ||
| HL_7D80_115 | No text annotation | ||
| HL_7D80_015 | Anticodon loop related | ||
| HL_7D80_016 | No text annotation | ||
| HL_7D80_131 | No text annotation | ||
| HL_7D80_021 | GNRA wlth tandem sheared | ||
| HL_7D80_025 | No text annotation | ||
| HL_7D80_027 | No text annotation | ||
| HL_7D80_028 | No text annotation | ||
| HL_7D80_029 | GNRA wlth tandem sheared | ||
| HL_7D80_118 | No text annotation | ||
| HL_7D80_035 | No text annotation | ||
| HL_7D80_038 | No text annotation | ||
| HL_7D80_133 | No text annotation | ||
| HL_7D80_119 | GNRA with extra cWW | ||
| HL_7D80_043 | No text annotation | ||
| HL_7D80_045 | No text annotation | ||
| HL_7D80_047 | GNRA | ||
| HL_7D80_120 | No text annotation | ||
| HL_7D80_121 | No text annotation | ||
| HL_7D80_051 | No text annotation | ||
| HL_7D80_055 | No text annotation | ||
| HL_7D80_056 | tRNA anticodon loop | ||
| HL_7D80_060 | No text annotation | ||
| HL_7D80_067 | No text annotation | ||
| HL_7D80_123 | No text annotation | ||
| HL_7D80_069 | GNRA | ||
| HL_7D80_124 | No text annotation | ||
| HL_7D80_071 | No text annotation | ||
| HL_7D80_072 | GNRA | ||
| HL_7D80_073 | GNRA | ||
| HL_7D80_074 | No text annotation | ||
| HL_7D80_075 | GNRA related | ||
| HL_7D80_125 | No text annotation | ||
| HL_7D80_076 | GNRA | ||
| HL_7D80_078 | UNCG | ||
| HL_7D80_079 | No text annotation | ||
| HL_7D80_080 | No text annotation | ||
| HL_7D80_137 | UNCG | ||
| HL_7D80_081 | No text annotation | ||
| HL_7D80_082 | No text annotation | ||
| HL_7D80_083 | No text annotation | ||
| HL_7D80_138 | GNRA-like with tWH | ||
| HL_7D80_084 | No text annotation | ||
| HL_7D80_087 | No text annotation | ||
| HL_7D80_091 | No text annotation | ||
| HL_7D80_093 | T-loop related | ||
| HL_7D80_094 | No text annotation | ||
| HL_7D80_095 | GNRA | ||
| HL_7D80_126 | GNRA with extra near cWW | ||
| HL_7D80_096 | GNRA | ||
| HL_7D80_097 | T-loop with 3 stacked bulged bases | ||
| HL_7D80_098 | No text annotation | ||
| HL_7D80_099 | UNCG | ||
| HL_7D80_127 | No text annotation | ||
| HL_7D80_100 | tRNA D-loop | ||
| HL_7D80_101 | No text annotation | ||
| HL_7D80_102 | No text annotation | ||
| HL_7D80_103 | No text annotation | ||
| HL_7D80_104 | tRNA D-loop | ||
| HL_7D80_105 | No text annotation | ||
| HL_7D80_128 | No text annotation | ||
| HL_7D80_108 | tRNA D-loop | ||
| HL_7D80_109 | No text annotation | ||
| HL_7D80_110 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7D80_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | geometric IL_7A0S_001 IL_22311.1 | |
| IL_7D80_208 | 1/A/32:35, 1/A/445:473 | No text annotation | ||
| IL_7D80_002 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_7D80_209 | 1/A/43:44, 1/A/434:436 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_7D80_004 | 1/A/81:85, 1/A/97:105 | No text annotation | homologous IL_5J7L_248 NA | |
| IL_7D80_005 | 1/A/183:184, 1/A/212:214 | Single stack bend | homologous IL_4WF9_007 IL_15011.1 | |
| IL_7D80_006 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_7D80_007 | 1/A/269:271, 1/A/366:370 | No text annotation | homologous IL_5J7L_252 NA | |
| IL_7D80_211 | 1/A/293:295, 1/A/343:347 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_7D80_010 | 1/A/481:484, 1/A/496:509 | No text annotation | geometric IL_5J7L_255 NA | |
| IL_7D80_011 | 1/A/535:539, 1/A/554:558 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_7D80_012 | 1/A/564:566, 1/A/575:577 | Isolated non-canonical cWW pair | geometric IL_6CZR_157 NA | |
| IL_7D80_161 | 1/A/564:566, 1/A/575:578 | No text annotation | ||
| IL_7D80_013 | 1/A/605:610, 1/A/618:623 | No text annotation | ||
| IL_7D80_014 | 1/A/672:674, 1/A/806:808 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 NA | |
| IL_7D80_015 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_7D80_212 | 1/A/674:680, 1/A/797:806 | No text annotation | ||
| IL_7D80_016 | 1/A/697:698, 1/A/763:765 | Single bulged A | geometric IL_4V9F_025 IL_14190.1 | |
| IL_7D80_017 | 1/A/701:707, 1/A/724:731 | No text annotation | ||
| IL_7D80_018 | 1/A/738:740, 1/A/757:758 | Major groove platform | homologous IL_4WF9_026 IL_48076.7 | |
| IL_7D80_019 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases | geometric IL_4V9F_030 IL_57881.1 | |
| IL_7D80_020 | 1/A/837:838, 1/A/940:942 | Single stack bend | homologous IL_5J7L_266 NA | |
| IL_7D80_165 | 1/A/840:848, 1/A/930:938 | No text annotation | ||
| IL_7D80_021 | 1/A/843:848, 1/A/930:935 | No text annotation | ||
| IL_7D80_213 | 1/A/850:851, 1/A/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_7D80_023 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 NA | |
| IL_7D80_024 | 1/A/862:868, 1/A/909:915 | No text annotation | ||
| IL_7D80_025 | 1/A/870:872, 1/A/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_7D80_027 | 1/A/993:996, 1/A/1159:1161 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_42997.4 | |
| IL_7D80_166 | 1/A/996:1002, 1/A/1153:1159 | No text annotation | ||
| IL_7D80_028 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
| IL_7D80_029 | 1/A/1003:1011, 1/A/1150:1152 | No text annotation | ||
| IL_7D80_214 | 1/A/1004:1013, 1/A/1149:1151 | No text annotation | ||
| IL_7D80_030 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U | homologous IL_5J7L_279 NA | |
| IL_7D80_215 | 1/A/1016:1024, 1/A/1140:1146 | No text annotation | ||
| IL_7D80_031 | 1/A/1017:1024, 1/A/1140:1145 | No text annotation | ||
| IL_7D80_032 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_7D80_033 | 1/A/1030:1034, 1/A/1121:1124 | Tandem non-canonical cWW pairs | geometric IL_5J7L_033 NA | |
| IL_7D80_216 | 1/A/1031:1035, 1/A/1120:1123 | Tandem non-canonical cWW pairs | geometric IL_8CRE_434 IL_15225.1 | |
| IL_7D80_037 | 1/A/1196:1199, 1/A/1246:1250 | Tandem non-canonical cWW pairs | geometric IL_4WF9_110 IL_15225.1 | |
| IL_7D80_038 | 1/A/1202:1208, 1/A/1238:1243 | No text annotation | ||
| IL_7D80_171 | 1/A/1202:1216, 1/A/1233:1243 | No text annotation | ||
| IL_7D80_039 | 1/A/1208:1216, 1/A/1233:1238 | No text annotation | ||
| IL_7D80_040 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_7D80_041 | 1/A/1319:1323, 1/A/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_7D80_217 | 1/A/1351:1353, 1/A/1379:1380 | Single stack bend with SAM intercalation | geometric IL_6FZ0_001 NA | |
| IL_7D80_218 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN | geometric IL_5J7L_292 NA | |
| IL_7D80_219 | 1/A/1353:1355, 1/A/1376:1379 | No text annotation | ||
| IL_7D80_043 | 1/A/1357:1362, 1/A/1369:1374 | tSH-tHW-tHS-cWW | geometric IL_3LQX_002 IL_35186.1 | |
| IL_7D80_220 | 1/A/1431:1435, 1/A/1557:1562 | No text annotation | ||
| IL_7D80_047 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW | homologous IL_7A0S_053 IL_74317.1 | |
| IL_7D80_221 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U | homologous IL_5J7L_298 NA | |
| IL_7D80_222 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_7D80_050 | 1/A/1474:1478, 1/A/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
| IL_7D80_052 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_7D80_176 | 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
| IL_7D80_054 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_7D80_055 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
| IL_7D80_223 | 1/A/1663:1674, 1/A/1990:1997 | No text annotation | ||
| IL_7D80_056 | 1/A/1666:1674, 1/A/1990:1994 | No text annotation | geometric IL_4WF9_117 IL_80252.1 | |
| IL_7D80_178 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 NA | |
| IL_7D80_060 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_7D80_061 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_7D80_062 | 1/A/1837:1840, 1/A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_73108.1 | |
| IL_7D80_063 | 1/A/1841:1842, 1/A/1898:1901 | Major groove intercalation | homologous IL_4WF9_071 IL_78536.1 | |
| IL_7D80_181 | 1/A/1841:1844, 1/A/1896:1901 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
| IL_7D80_064 | 1/A/1846:1849, 1/A/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_7D80_224 | 1/A/1851:1860, 1/A/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_7D80_065 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN variation | homologous IL_4WF9_075 IL_77691.6 | |
| IL_7D80_066 | 1/A/1933:1945, 1/A/1961:1967 | No text annotation | ||
| IL_7D80_067 | 1/A/2050:2053, 1/A/2616:2618 | No text annotation | geometric IL_6CZR_136 NA | |
| IL_7D80_068 | 1/A/2053:2057, 1/A/2611:2616 | No text annotation | ||
| IL_7D80_069 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U | geometric IL_7RQB_080 NA | |
| IL_7D80_070 | 1/A/2069:2072, 1/A/2437:2442 | Tandem non-canonical cWW pairs | geometric IL_4V88_429 NA | |
| IL_7D80_071 | 1/A/2081:2084, 1/A/2235:2239 | No text annotation | ||
| IL_7D80_072 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_7D80_076 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_7D80_077 | 1/A/2348:2353, 1/A/2364:2369 | No text annotation | ||
| IL_7D80_078 | 1/A/2401:2403, 1/A/2414:2415 | Major groove platform | homologous IL_7A0S_082 IL_48076.7 | |
| IL_7D80_079 | 1/A/2453:2454, 1/A/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_15011.1 | |
| IL_7D80_226 | 1/A/2453:2461, 1/A/2489:2500 | No text annotation | ||
| IL_7D80_080 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform | geometric IL_4WF9_090 IL_48076.7 | |
| IL_7D80_081 | 1/A/2455:2461, 1/A/2489:2496 | No text annotation | ||
| IL_7D80_082 | 1/A/2466:2470, 1/A/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_7D80_083 | 1/A/2508:2513, 1/A/2571:2580 | No text annotation | ||
| IL_7D80_084 | 1/A/2522:2523, 1/A/2540:2543 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.1 | |
| IL_7D80_085 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A | homologous IL_5J7L_344 NA | |
| IL_7D80_086 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_7D80_087 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.5 | |
| IL_7D80_195 | 1/A/2676:2680, 1/A/2727:2732 | No text annotation | ||
| IL_7D80_088 | 1/A/2680:2684, 1/A/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_7D80_227 | 1/A/2680:2686, 1/A/2723:2727 | No text annotation | ||
| IL_7D80_089 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_7D80_228 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_7D80_092 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation | geometric IL_5J7L_351 NA | |
| IL_7D80_093 | 1/A/2838:2839, 1/A/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_7D80_229 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_7D80_095 | 1/A/2847:2852, 1/A/2865:2869 | tHS double platform | homologous IL_5J7L_354 NA | |
| IL_7D80_098 | 1/B/47:52, 1/B/359:361 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_7D80_102 | 1/B/242:247, 1/B/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_7D80_104 | 1/B/292:293, 1/B/304:308 | C-loop | homologous IL_5J7L_016 NA | |
| IL_7D80_234 | 1/B/660:666, 1/B/740:745 | No text annotation | ||
| IL_7D80_120 | 1/B/774:778, 1/B/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_7D80_122 | 1/B/887:894, 1/B/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_7D80_123 | 1/B/922:923, 1/B/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_7D80_124 | 1/B/925:927, 1/B/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_7D80_237 | 1/B/925:928, 1/B/1389:1391 | Isolated non-canonical cWW pair | geometric IL_1YZ9_002 IL_01003.1 | |
| IL_7D80_203 | 1/B/950:985, 1/B/1220:1231 | No text annotation | ||
| IL_7D80_238 | 1/B/1048:1056, 1/B/1204:1209 | No text annotation | ||
| IL_7D80_131 | 1/B/1050:1056, 1/B/1204:1208 | No text annotation | ||
| IL_7D80_141 | 1/B/1399:1401, 1/B/1501:1504 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_7D80_142 | 1/B/1401:1404, 1/B/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7D80_143 | 1/B/1405:1407, 1/B/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5MWI_002 NA | |
| IL_7D80_146 | 1/B/1416:1419, 1/B/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_7D80_150 | 1/B/1508:1509, 1/B/1526:1528 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_7D80_155 | 1/a/71:79, 1/a/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7D80_156 | No text annotation | ||
| IL_7D80_157 | No text annotation | ||
| IL_7D80_003 | No text annotation | ||
| IL_7D80_158 | Kink-turn | ||
| IL_7D80_159 | No text annotation | ||
| IL_7D80_210 | No text annotation | ||
| IL_7D80_008 | No text annotation | ||
| IL_7D80_009 | No text annotation | ||
| IL_7D80_160 | No text annotation | ||
| IL_7D80_162 | No text annotation | ||
| IL_7D80_163 | No text annotation | ||
| IL_7D80_164 | No text annotation | ||
| IL_7D80_022 | No text annotation | ||
| IL_7D80_026 | Double sheared with non-canonical cWW | ||
| IL_7D80_167 | No text annotation | ||
| IL_7D80_168 | No text annotation | ||
| IL_7D80_169 | Tandem non-canonical cWW pairs with near WC pairs | ||
| IL_7D80_034 | Tandem non-canonical cWW pairs | ||
| IL_7D80_035 | Isolated cWH basepair | ||
| IL_7D80_036 | Kink-turn | ||
| IL_7D80_170 | No text annotation | ||
| IL_7D80_042 | No text annotation | ||
| IL_7D80_172 | No text annotation | ||
| IL_7D80_173 | No text annotation | ||
| IL_7D80_044 | No text annotation | ||
| IL_7D80_045 | UAA/GAN | ||
| IL_7D80_046 | No text annotation | ||
| IL_7D80_174 | Partly complementary | ||
| IL_7D80_048 | Tandem non-canonical cWW pairs | ||
| IL_7D80_049 | No text annotation | ||
| IL_7D80_175 | No text annotation | ||
| IL_7D80_051 | 180 degree turn | ||
| IL_7D80_053 | Triple sheared related | ||
| IL_7D80_177 | No text annotation | ||
| IL_7D80_057 | No text annotation | ||
| IL_7D80_058 | No text annotation | ||
| IL_7D80_179 | Triple sheared | ||
| IL_7D80_059 | Triple sheared with non-canonical cWW | ||
| IL_7D80_180 | No text annotation | ||
| IL_7D80_182 | No text annotation | ||
| IL_7D80_183 | No text annotation | ||
| IL_7D80_184 | Isolated non-canonical cWW pair | ||
| IL_7D80_073 | Triple non-canonical cWW pairs | ||
| IL_7D80_185 | Isolated non-canonical cWW pair | ||
| IL_7D80_074 | No text annotation | ||
| IL_7D80_225 | No text annotation | ||
| IL_7D80_186 | No text annotation | ||
| IL_7D80_075 | No text annotation | ||
| IL_7D80_187 | Isolated near basepair | ||
| IL_7D80_188 | No text annotation | ||
| IL_7D80_189 | Tandem non-canonical cWW pairs | ||
| IL_7D80_190 | No text annotation | ||
| IL_7D80_191 | No text annotation | ||
| IL_7D80_192 | No text annotation | ||
| IL_7D80_193 | No text annotation | ||
| IL_7D80_194 | No text annotation | ||
| IL_7D80_196 | No text annotation | ||
| IL_7D80_090 | No text annotation | ||
| IL_7D80_091 | Single bulged A | ||
| IL_7D80_094 | No text annotation | ||
| IL_7D80_096 | Tandem non-canonical cWW pairs | ||
| IL_7D80_230 | Single bulged G | ||
| IL_7D80_097 | Single bulged A | ||
| IL_7D80_099 | Minor groove platform | ||
| IL_7D80_197 | No text annotation | ||
| IL_7D80_231 | No text annotation | ||
| IL_7D80_100 | Tandem non-canonical cWW pairs | ||
| IL_7D80_101 | Minor groove platform related | ||
| IL_7D80_198 | No text annotation | ||
| IL_7D80_103 | No text annotation | ||
| IL_7D80_105 | No text annotation | ||
| IL_7D80_232 | C-loop | ||
| IL_7D80_106 | No text annotation | ||
| IL_7D80_107 | No text annotation | ||
| IL_7D80_108 | No text annotation | ||
| IL_7D80_109 | No text annotation | ||
| IL_7D80_110 | SSU/LSU pseudoknot | ||
| IL_7D80_111 | Kink-turn related | ||
| IL_7D80_112 | tSH-tHW-tHS | ||
| IL_7D80_113 | Major groove platform | ||
| IL_7D80_114 | Major groove minor groove platform; mini C-loop | ||
| IL_7D80_233 | No text annotation | ||
| IL_7D80_115 | No text annotation | ||
| IL_7D80_116 | Major groove platform; stack outside cWW | ||
| IL_7D80_117 | Single stack bend | ||
| IL_7D80_118 | No text annotation | ||
| IL_7D80_119 | No text annotation | ||
| IL_7D80_235 | Kink-turn | ||
| IL_7D80_121 | tSH-tHW-tHS | ||
| IL_7D80_199 | Isolated non-canonical cWW pair | ||
| IL_7D80_200 | No text annotation | ||
| IL_7D80_236 | Isolated non-canonical cWW pair | ||
| IL_7D80_201 | Partly complementary | ||
| IL_7D80_202 | Minor groove platform | ||
| IL_7D80_125 | No text annotation | ||
| IL_7D80_126 | No text annotation | ||
| IL_7D80_127 | Minor groove platform | ||
| IL_7D80_128 | No text annotation | ||
| IL_7D80_204 | No text annotation | ||
| IL_7D80_129 | No text annotation | ||
| IL_7D80_205 | No text annotation | ||
| IL_7D80_130 | Single bulged U | ||
| IL_7D80_132 | Minor groove platform | ||
| IL_7D80_133 | Single bulged A | ||
| IL_7D80_134 | Isolated non-canonical cWW pair | ||
| IL_7D80_135 | No text annotation | ||
| IL_7D80_206 | No text annotation | ||
| IL_7D80_136 | No text annotation | ||
| IL_7D80_137 | No text annotation | ||
| IL_7D80_138 | 180 degree turn | ||
| IL_7D80_139 | Double sheared with non-canonical cWW | ||
| IL_7D80_140 | No text annotation | ||
| IL_7D80_239 | No text annotation | ||
| IL_7D80_144 | No text annotation | ||
| IL_7D80_145 | Isolated non-canonical cWW pair | ||
| IL_7D80_207 | Tandem non-canonical cWW pairs | ||
| IL_7D80_147 | Triple sheared related | ||
| IL_7D80_148 | Major groove platform with extra cWW | ||
| IL_7D80_240 | Single bulged A | ||
| IL_7D80_241 | No text annotation | ||
| IL_7D80_149 | No text annotation | ||
| IL_7D80_151 | Major groove intercalation | ||
| IL_7D80_152 | No text annotation | ||
| IL_7D80_153 | No text annotation | ||
| IL_7D80_154 | No text annotation | ||
| IL_7D80_242 | Symmetric double minor groove platform |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7D80_022 | 1/A/24:31, 1/A/474:484, 1/A/496:516 | No text annotation | ||
| J3_7D80_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_7D80_044 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_7D80_024 | 1/A/297:301, 1/A/316:325, 1/A/337:341 | No text annotation | homologous J3_5J7L_068 NA | |
| J3_7D80_045 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_7D80_004 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation | homologous J3_4WF9_003 J3_69816.1 | |
| J3_7D80_026 | 1/A/698:707, 1/A/724:736, 1/A/760:763 | No text annotation | ||
| J3_7D80_005 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_7D80_006 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_7D80_047 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_7D80_029 | 1/A/1423:1429, 1/A/1564:1565, 1/A/1568:1575 | No text annotation | ||
| J3_7D80_030 | 1/A/1771:1794, 1/A/1825:1830, 1/A/1975:1980 | No text annotation | ||
| J3_7D80_007 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_7D80_031 | 1/A/2091:2093, 1/A/2196:2204, 1/A/2220:2228 | No text annotation | ||
| J3_7D80_008 | 1/A/2282:2284, 1/A/2384:2397, 1/A/2419:2427 | No text annotation | ||
| J3_7D80_032 | 1/A/2293:2299, 1/A/2317:2323, 1/A/2332:2339 | No text annotation | ||
| J3_7D80_009 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation | ||
| J3_7D80_010 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation | ||
| J3_7D80_011 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_7D80_012 | 1/A/2811:2815, 1/A/2831:2836, 1/A/2882:2889 | No text annotation | ||
| J3_7D80_037 | 1/B/672:677, 1/B/713:725, 1/B/732:734 | No text annotation | ||
| J3_7D80_015 | 1/B/826:829, 1/B/857:861, 1/B/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_7D80_016 | 1/B/954:962, 1/B/973:985, 1/B/1220:1226 | No text annotation | homologous J3_6CZR_020 NA | |
| J3_7D80_017 | 1/B/989:993, 1/B/1045:1047, 1/B/1210:1216 | No text annotation | ||
| J3_7D80_040 | 1/B/1061:1068, 1/B/1107:1113, 1/B/1187:1195 | No text annotation | ||
| J3_7D80_018 | 1/B/1063:1068, 1/B/1107:1113, 1/B/1187:1193 | No text annotation | geometric J3_4LFB_007 J3_01343.1 | |
| J3_7D80_041 | 1/B/1073:1074, 1/B/1083:1087, 1/B/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_7D80_051 | 1/a/10:16, 1/a/68:70, 1/a/106:110 | No text annotation | homologous J3_5J7L_049 NA | |
| J4_7D80_015 | 1/A/268:271, 1/A/366:375, 1/A/399:406, 1/A/421:424 | No text annotation | ||
| J4_7D80_002 | 1/A/601:610, 1/A/618:628, 1/A/635:638, 1/A/650:656 | No text annotation | ||
| J4_7D80_016 | 1/A/1270:1279, 1/A/1291:1295, 1/A/1645:1648, 1/A/2009:2010 | No text annotation | ||
| J4_7D80_004 | 1/A/1309:1319, 1/A/1333:1343, 1/A/1404:1405, 1/A/1597:1605 | No text annotation | ||
| J4_7D80_005 | 1/A/1444:1445, 1/A/1466:1467, 1/A/1525:1526, 1/A/1546:1547 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_7D80_017 | 1/A/1674:1682, 1/A/1706:1707, 1/A/1751:1768, 1/A/1984:1990 | No text annotation | ||
| J4_7D80_018 | 1/A/1772:1776, 1/A/1788:1792, 1/A/1827:1830, 1/A/1975:1979 | No text annotation | homologous J4_4WF9_007 J4_61477.6 | |
| J4_7D80_019 | 1/A/1832:1835, 1/A/1905:1906, 1/A/1924:1933, 1/A/1967:1973 | No text annotation | ||
| J4_7D80_020 | 1/A/2285:2290, 1/A/2342:2347, 1/A/2370:2372, 1/A/2381:2383 | No text annotation | ||
| J4_7D80_021 | 1/A/2641:2648, 1/A/2672:2676, 1/A/2732:2742, 1/A/2762:2773 | No text annotation | ||
| J4_7D80_022 | 1/B/115:122, 1/B/239:240, 1/B/286:289, 1/B/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_7D80_013 | 1/B/569:577, 1/B/764:769, 1/B/810:822, 1/B/878:881 | No text annotation | ||
| J5_7D80_006 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:151, 1/A/175:178 | No text annotation | ||
| J5_7D80_002 | 1/A/531:539, 1/A/554:564, 1/A/578:580, 1/A/1260:1262, 1/A/2017:2018 | No text annotation | ||
| J5_7D80_007 | 1/A/582:589, 1/A/668:674, 1/A/806:812, 1/A/1195:1198, 1/A/1247:1258 | No text annotation | ||
| J5_7D80_004 | 1/A/1309:1319, 1/A/1333:1350, 1/A/1381:1386, 1/A/1401:1405, 1/A/1597:1605 | No text annotation | ||
| J6_7D80_002 | 1/A/45:46, 1/A/179:183, 1/A/214:224, 1/A/231:235, 1/A/262:266, 1/A/426:433 | No text annotation | ||
| J7_7D80_003 | 1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2895 | No text annotation | ||
| J7_7D80_004 | 1/A/817:822, 1/A/835:837, 1/A/942:949, 1/A/968:977, 1/A/986:992, 1/A/1162:1165, 1/A/1184:1190 | No text annotation | ||
| J8_7D80_002 | 1/A/2050:2085, 1/A/2234:2246, 1/A/2258:2284, 1/A/2384:2396, 1/A/2420:2453, 1/A/2500:2508, 1/A/2580:2588, 1/A/2606:2618 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7D80_002 | No text annotation | ||
| J3_7D80_023 | No text annotation | ||
| J3_7D80_003 | No text annotation | ||
| J3_7D80_025 | No text annotation | ||
| J3_7D80_046 | No text annotation | ||
| J3_7D80_027 | No text annotation | ||
| J3_7D80_028 | No text annotation | ||
| J3_7D80_033 | No text annotation | ||
| J3_7D80_034 | No text annotation | ||
| J3_7D80_048 | No text annotation | ||
| J3_7D80_013 | No text annotation | ||
| J3_7D80_035 | No text annotation | ||
| J3_7D80_036 | No text annotation | ||
| J3_7D80_014 | No text annotation | ||
| J3_7D80_049 | No text annotation | ||
| J3_7D80_038 | No text annotation | ||
| J3_7D80_039 | No text annotation | ||
| J3_7D80_019 | No text annotation | ||
| J3_7D80_042 | No text annotation | ||
| J3_7D80_043 | No text annotation | ||
| J3_7D80_020 | No text annotation | ||
| J3_7D80_050 | No text annotation | ||
| J3_7D80_021 | No text annotation | ||
| J4_7D80_001 | No text annotation | ||
| J4_7D80_003 | No text annotation | ||
| J4_7D80_006 | No text annotation | ||
| J4_7D80_007 | No text annotation | ||
| J4_7D80_008 | No text annotation | ||
| J4_7D80_009 | No text annotation | ||
| J4_7D80_010 | No text annotation | ||
| J4_7D80_011 | No text annotation | ||
| J4_7D80_023 | No text annotation | ||
| J4_7D80_012 | No text annotation | ||
| J4_7D80_014 | No text annotation | ||
| J4_7D80_024 | No text annotation | ||
| J5_7D80_001 | No text annotation | ||
| J5_7D80_003 | No text annotation | ||
| J5_7D80_008 | No text annotation | ||
| J5_7D80_005 | No text annotation | ||
| J6_7D80_001 | No text annotation | ||
| J7_7D80_001 | No text annotation | ||
| J7_7D80_002 | No text annotation | ||
| J8_7D80_001 | No text annotation |
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