HL_7D80_010

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases

7D80|1|A|U|321, 7D80|1|A|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_010 not in the Motif Atlas

Homologous match to HL_7A0S_011

Geometric discrepancy: 0.1982

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7D80|1|A|G|319
7D80|1|A|A|320
7D80|1|A|U|321
7D80|1|A|A|322
7D80|1|A|C|323

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4