HL_7D80_025

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGGGGUCAUCCCGACUUACC

Length

20 nucleotides

Bulged bases

7D80|1|A|U|887, 7D80|1|A|C|888, 7D80|1|A|C|889, 7D80|1|A|C|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|G|879
7D80|1|A|G|880
7D80|1|A|G|881
7D80|1|A|G|882
7D80|1|A|G|883
7D80|1|A|U|884
7D80|1|A|C|885
7D80|1|A|A|886
7D80|1|A|U|887
7D80|1|A|C|888
7D80|1|A|C|889
7D80|1|A|C|890
7D80|1|A|G|891
7D80|1|A|A|892
7D80|1|A|C|893
7D80|1|A|U|894
7D80|1|A|U|895
7D80|1|A|A|896
7D80|1|A|C|897
7D80|1|A|C|898

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S13

Chain Z

Transfer RNA; tRNA