HL_7D80_027

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAAACAACC

Length

10 nucleotides

Bulged bases

7D80|1|A|A|983, 7D80|1|A|A|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_027 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3248

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7D80|1|A|G|977
7D80|1|A|G|978
7D80|1|A|A|979
7D80|1|A|A|980
7D80|1|A|A|981
7D80|1|A|C|982
7D80|1|A|A|983
7D80|1|A|A|984
7D80|1|A|C|985
7D80|1|A|C|986

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain a

5S ribosomal RNA; 5S rRNA

Chain p

50S ribosomal protein L20

Chain q

50S ribosomal protein L21

Chain x

50S ribosomal protein L30