HL_7D80_028

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGCUUAGAAGCAGCC

Length

15 nucleotides

Bulged bases

7D80|1|A|U|1065, 7D80|1|A|U|1066, 7D80|1|A|A|1067, 7D80|1|A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|G|1062
7D80|1|A|G|1063
7D80|1|A|C|1064
7D80|1|A|U|1065
7D80|1|A|U|1066
7D80|1|A|A|1067
7D80|1|A|G|1068
7D80|1|A|A|1069
7D80|1|A|A|1070
7D80|1|A|G|1071
7D80|1|A|C|1072
7D80|1|A|A|1073
7D80|1|A|G|1074
7D80|1|A|C|1075
7D80|1|A|C|1076

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L11