HL_7D80_030

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AGCGACGCUUAUGCGUUGUU

Length

20 nucleotides

Bulged bases

7D80|1|A|U|1174, 7D80|1|A|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|A|1165
7D80|1|A|G|1166
7D80|1|A|C|1167
7D80|1|A|G|1168
7D80|1|A|A|1169
7D80|1|A|C|1170
7D80|1|A|G|1171
7D80|1|A|C|1172
7D80|1|A|U|1173
7D80|1|A|U|1174
7D80|1|A|A|1175
7D80|1|A|U|1176
7D80|1|A|G|1177
7D80|1|A|C|1178
7D80|1|A|G|1179
7D80|1|A|U|1180
7D80|1|A|U|1181
7D80|1|A|G|1182
7D80|1|A|U|1183
7D80|1|A|U|1184

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L21

Chain x

50S ribosomal protein L30