HL_7D80_040

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

7D80|1|A|A|1614, 7D80|1|A|A|1616, 7D80|1|A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_040 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1738

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7D80|1|A|C|1612
7D80|1|A|G|1613
7D80|1|A|A|1614
7D80|1|A|C|1615
7D80|1|A|A|1616
7D80|1|A|C|1617
7D80|1|A|A|1618
7D80|1|A|G|1619

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain r

50S ribosomal protein L22