HL_7D80_051

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

7D80|1|A|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_051 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2584

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7D80|1|A|A|2142
7D80|1|A|C|2143
7D80|1|A|G|2144
7D80|1|A|C|2145
7D80|1|A|C|2146
7D80|1|A|A|2147
7D80|1|A|G|2148
7D80|1|A|U|2149

Current chains

Chain A

23S ribosomal RNA

Nearby chains