HL_7D80_056
3D structure
- PDB id
- 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GUGCAAUGGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7D80_056 not in the Motif Atlas
- Geometric match to HL_8H1B_001
- Geometric discrepancy: 0.3192
- The information below is about HL_8H1B_001
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_10453.3
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
7D80|1|A|G|2323
7D80|1|A|U|2324
7D80|1|A|G|2325
7D80|1|A|C|2326
7D80|1|A|A|2327
7D80|1|A|A|2328
7D80|1|A|U|2329
7D80|1|A|G|2330
7D80|1|A|G|2331
7D80|1|A|C|2332
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain e
- 50S ribosomal protein L5
- Chain l
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L27
Coloring options: