HL_7D80_066

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7D80|1|A|G|2751, 7D80|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_066 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1392

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7D80|1|A|C|2745
7D80|1|A|U|2746
7D80|1|A|G|2747
7D80|1|A|A|2748
7D80|1|A|A|2749
7D80|1|A|A|2750
7D80|1|A|G|2751
7D80|1|A|C|2752
7D80|1|A|A|2753
7D80|1|A|U|2754
7D80|1|A|C|2755
7D80|1|A|U|2756
7D80|1|A|A|2757
7D80|1|A|A|2758
7D80|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain i

50S ribosomal protein L13