HL_7D80_078

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

7D80|1|B|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_078 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.2054

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7D80|1|B|C|342
7D80|1|B|U|343
7D80|1|B|A|344
7D80|1|B|C|345
7D80|1|B|G|346
7D80|1|B|G|347

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19