HL_7D80_094

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

7D80|1|B|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_094 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3343

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7D80|1|B|G|1134
7D80|1|B|U|1135
7D80|1|B|C|1136
7D80|1|B|C|1137
7D80|1|B|G|1138
7D80|1|B|G|1139
7D80|1|B|C|1140

Current chains

Chain B

16S ribosomal RNA

Nearby chains