HL_7D80_099

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7D80|1|B|U|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_099 not in the Motif Atlas

Geometric match to HL_4WF9_040

Geometric discrepancy: 0.1458

The information below is about HL_4WF9_040

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7D80|1|B|C|1449
7D80|1|B|U|1450
7D80|1|B|U|1451
7D80|1|B|C|1452
7D80|1|B|G|1453
7D80|1|B|G|1454

Current chains

Chain B

16S ribosomal RNA

Nearby chains