HL_7D80_101

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UCAGGGGAGA

Length

10 nucleotides

Bulged bases

7D80|1|X|G|18, 7D80|1|X|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_101 not in the Motif Atlas

Homologous match to HL_1SER_001

Geometric discrepancy: 0.5723

The information below is about HL_1SER_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.3

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

7D80|1|X|U|12
7D80|1|X|C|13
7D80|1|X|A|14
7D80|1|X|G|15
7D80|1|X|G|18
7D80|1|X|G|19
7D80|1|X|G|20
7D80|1|X|A|21
7D80|1|X|G|22
7D80|1|X|A|23

Current chains

Chain X

E-site tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA