HL_7D80_104
3D structure
- PDB id
- 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UGACUUUACA
- Length
- 10 nucleotides
- Bulged bases
- 7D80|1|Z|A|38
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7D80_104 not in the Motif Atlas
- Geometric match to HL_3AL0_001
- Geometric discrepancy: 0.3873
- The information below is about HL_3AL0_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
7D80|1|Z|U|29
7D80|1|Z|G|30
7D80|1|Z|A|31
7D80|1|Z|C|32
7D80|1|Z|U|33
7D80|1|Z|U|35
7D80|1|Z|U|36
7D80|1|Z|A|38
7D80|1|Z|C|40
7D80|1|Z|A|41
Current chains
- Chain Z
- A-site tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain B
- Small subunit ribosomal RNA; SSU rRNA
- Chain D
- 30S ribosomal protein S3
- Chain M
- 30S ribosomal protein S12
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