HL_7D80_108
3D structure
- PDB id
- 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CAGUCGGUUAG
- Length
- 11 nucleotides
- Bulged bases
- 7D80|1|y|G|18, 7D80|1|y|U|19, 7D80|1|y|U|20, 7D80|1|y|A|21
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7D80_108 not in the Motif Atlas
- Homologous match to HL_6JXM_001
- Geometric discrepancy: 0.3564
- The information below is about HL_6JXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
7D80|1|y|C|13
7D80|1|y|A|14
7D80|1|y|G|15
7D80|1|y|U|16
7D80|1|y|C|17
7D80|1|y|G|17|||A
7D80|1|y|G|18
7D80|1|y|U|19
7D80|1|y|U|20
7D80|1|y|A|21
7D80|1|y|G|22
Current chains
- Chain y
- P-site tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain e
- 50S ribosomal protein L5
Coloring options: